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Report for CCDS12700.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12700.1 Public Homo sapiens 19 DHX34 24 110 108 CCDS HistoryNCBI Gene:9704Re-query CCDS DB by CCDS ID:12700.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12700.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328771.9 ENSP00000331907.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000328771.9Link to Ensembl Protein Viewer:ENSP00000331907.4Re-query CCDS DB by Nucleotide ID:ENST00000328771Re-query CCDS DB by Protein ID:ENSP00000331907
Original member Current member NCBI NM_014681.6 NP_055496.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014681.6Link to Protein Sequence:NP_055496.2Re-query CCDS DB by Nucleotide ID:NM_014681Re-query CCDS DB by Protein ID:NP_055496Link to BLAST:NP_055496.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055496.2 1143 Q14147 1143 100% 0 0

Chromosomal Locations for CCDS 12700.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 47353031 47353735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47355039 47355350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47357866 47358120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47359968 47360070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47362476 47362693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47366981 47367155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47372730 47372923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47373599 47373700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47375466 47375708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47375924 47376097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47376443 47376560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47377100 47377206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47379710 47379985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47380816 47380992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47381186 47381324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47381980 47382113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3432 nt):
ATGCCTCCTCCTAGAACAAGGGAGGGCAGGGATCGCCGAGACCACCACCGGGCTCCCAGCGAGGAAGAGG
CCTTGGAGAAATGGGACTGGAATTGTCCAGAGACGCGTCGCCTCTTGGAAGATGCCTTCTTCCGTGAAGA
GGATTACATCCGTCAGGGTTCTGAGGAATGTCAGAAGTTTTGGACCTTCTTTGAACGCCTGCAGAGATTC
CAGAATCTCAAGACCTCCAGGAAGGAGGAGAAAGACCCTGGACAGCCCAAGCACAGCATCCCAGCGCTGG
CCGACCTACCTCGCACTTACGACCCACGTTACCGCATCAACCTCTCTGTTCTTGGCCCTGCCACGCGGGG
CTCTCAGGGACTGGGCAGGCACTTGCCCGCGGAGAGAGTGGCTGAGTTCCGCCGAGCCCTGTTGCACTAC
CTGGACTTTGGCCAGAAGCAGGCATTTGGGCGTCTGGCCAAGCTGCAGCGTGAGCGGGCAGCCCTCCCCA
TCGCCCAGTATGGGAACCGCATCCTGCAGACGCTGAAGGAGCACCAGGTGGTGGTAGTGGCCGGTGACAC
CGGCTGTGGCAAGTCCACTCAGGTGCCCCAGTACCTGCTGGCTGCTGGCTTCAGTCATGTGGCGTGCACC
CAGCCCCGGCGGATCGCCTGCATCTCACTGGCCAAGCGTGTGGGCTTTGAGAGCCTCAGTCAGTATGGCT
CACAGGTCGGCTACCAGATCCGCTTTGAGAGCACACGTTCGGCGGCCACCAAGATTGTATTCCTGACAGT
GGGGCTGCTCCTGCGACAAATCCAGCGGGAACCCAGCCTGCCCCAGTATGAGGTCCTGATTGTGGATGAA
GTCCATGAGCGGCATCTCCACAACGATTTCCTCCTGGGCGTCCTCCAGCGCCTGTTGCCCACGCGGCCTG
ACCTCAAGGTCATCCTCATGTCGGCCACCATCAACATCTCGCTCTTCTCCAGCTATTTCAGCAATGCCCC
TGTGGTACAGGTGCCTGGGAGGCTGTTCCCCATCACGGTTGTGTACCAGCCGCAGGAGGCGGAGCCGACC
ACGTCCAAGTCAGAGAAGCTGGACCCGCGGCCTTTCCTGAGGGTGCTGGAGTCCATTGACCACAAGTACC
CGCCTGAGGAGCGGGGTGACCTCCTCGTCTTCCTCAGCGGCATGGCGGAGATCAGCGCCGTGCTGGAGGC
TGCCCAGACCTATGCCAGCCACACCCAGCGCTGGGTGGTACTGCCACTGCACAGCGCCCTGTCTGTGGCC
GACCAGGACAAGGTATTTGATGTGGCACCCCCTGGAGTCCGGAAATGCATCCTCTCCACCAACATTGCTG
AGACCTCAGTCACCATTGACGGGATCCGCTTCGTAGTAGATTCCGGAAAGGTGAAGGAGATGAGCTACGA
TCCGCAGGCCAAGCTGCAACGGCTGCAGGAGTTCTGGATTAGTCAGGCCAGCGCAGAGCAGCGGAAGGGC
CGGGCGGGCCGCACGGGCCCCGGAGTCTGCTTCCGCCTCTATGCCGAATCGGACTATGATGCCTTCGCCC
CCTACCCCGTCCCAGAAATTCGGAGGGTGGCCCTGGACTCGTTGGTGCTGCAGATGAAGAGCATGAGTGT
GGGGGACCCCCGAACCTTCCCCTTCATCGAGCCCCCACCACCAGCCAGCCTGGAAACCGCCATCCTCTAC
CTCCGGGACCAGGGGGCCCTGGACAGCTCAGAGGCCCTCACACCCATTGGGTCCCTGCTAGCCCAGCTGC
CTGTGGACGTTGTGATTGGGAAGATGCTGATCCTGGGCTCCATGTTCAGCCTGGTGGAGCCTGTGCTCAC
CATCGCAGCCGCACTTAGCGTCCAGTCGCCCTTCACCCGCAGCGCCCAGAGCAGCCCAGAGTGCGCGGCA
GCACGGCGGCCGCTGGAGAGCGACCAGGGTGACCCCTTCACGCTCTTCAACGTCTTCAACGCCTGGGTGC
AGGTGAAATCTGAACGGAGCAGAAACTCTCGCAAGTGGTGCCGCCGCCGGGGCATAGAGGAGCATCGACT
GTACGAAATGGCCAACCTTCGGCGCCAGTTCAAGGAGCTGTTGGAGGACCACGGGCTGCTGGCTGGGGCC
CAGGCCGCGCAGGTAGGGGACAGCTACAGTCGGTTGCAGCAGCGCCGGGAGCGCCGGGCCCTGCACCAGC
TGAAACGCCAGCACGAGGAGGGCGCGGGGCGCAGGCGCAAGGTGCTGCGGCTGCAGGAGGAGCAGGACGG
CGGCTCCAGTGACGAGGACAGGGCTGGCCCAGCCCCCCCAGGGGCCAGTGATGGCGTGGACATCCAGGAT
GTGAAGTTCAAGCTTCGGCATGACCTGGCGCAGCTGCAGGCCGCTGCCAGCTCAGCCCAGGACCTGAGCC
GCGAGCAGCTGGCTCTGCTGAAGCTGGTGCTGGGCCGGGGCCTGTACCCACAGCTGGCCGTCCCCGACGC
CTTCAACAGCAGCCGAAAGGACTCAGACCAGATTTTCCACACGCAGGCCAAGCAGGGCGCCGTGCTGCAC
CCCACCTGCGTCTTCGCTGGCAGCCCCGAGGTGCTGCACGCACAGGAGCTGGAGGCCAGCAACTGCGACG
GAAGCCGAGACGACAAGGACAAGATGAGCAGCAAACACCAGCTCCTCAGCTTCGTGTCCCTGCTGGAGAC
CAACAAGCCGTACCTGGTGAACTGCGTCCGCATCCCTGCCCTCCAGTCCCTCCTGCTTTTTAGCCGGTCT
TTGGACACCAATGGTGACTGCTCCCGCCTGGTGGCCGATGGCTGGCTGGAGCTGCAGCTAGCAGACAGTG
AAAGTGCCATCCGACTCCTGGCGGCTTCCCTGCGGCTCCGTGCCCGCTGGGAAAGTGCCCTGGACCGGCA
GCTGGCGCACCAGGCCCAGCAGCAGCTGGAGGAGGAGGAGGAGGATACGCCAGTCAGCCCCAAGGAGGTG
GCCACCCTGAGCAAGGAACTCCTGCAATTCACGGCATCCAAGATTCCTTACAGCCTCCGGCGGCTCACAG
GGCTAGAAGTCCAGAACATGTATGTGGGACCCCAGACCATCCCAGCCACCCCCCATCTTCCTGGCCTCTT
TGGCAGCTCCACCCTGTCCCCCCACCCCACAAAGGGGGGCTACGCAGTCACTGACTTCCTCACCTACAAC
TGCCTCACGAATGACACAGACCTGTACAGCGACTGTCTCCGAACCTTCTGGACCTGCCCCCACTGTGGCC
TGCATGCGCCCCTCACGCCCCTGGAGCGCATCGCCCATGAGAACACCTGCCCCCAGGCCCCACAGGATGG
GCCCCCAGGGGCTGAGGAAGCTGCCCTCGAAACCCTCCAGAAGACATCTGTCCTGCAGAGGCCCTACCAC
TGCGAGGCCTGCGGGAAGGACTTCCTCTTTACACCCACAGAGGTGCTGCGCCACCGGAAGCAGCACGTGT
GA

Translation (1143 aa):
MPPPRTREGRDRRDHHRAPSEEEALEKWDWNCPETRRLLEDAFFREEDYIRQGSEECQKFWTFFERLQRF
QNLKTSRKEEKDPGQPKHSIPALADLPRTYDPRYRINLSVLGPATRGSQGLGRHLPAERVAEFRRALLHY
LDFGQKQAFGRLAKLQRERAALPIAQYGNRILQTLKEHQVVVVAGDTGCGKSTQVPQYLLAAGFSHVACT
QPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATKIVFLTVGLLLRQIQREPSLPQYEVLIVDE
VHERHLHNDFLLGVLQRLLPTRPDLKVILMSATINISLFSSYFSNAPVVQVPGRLFPITVVYQPQEAEPT
TSKSEKLDPRPFLRVLESIDHKYPPEERGDLLVFLSGMAEISAVLEAAQTYASHTQRWVVLPLHSALSVA
DQDKVFDVAPPGVRKCILSTNIAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKG
RAGRTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPASLETAILY
LRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRSAQSSPECAA
ARRPLESDQGDPFTLFNVFNAWVQVKSERSRNSRKWCRRRGIEEHRLYEMANLRRQFKELLEDHGLLAGA
QAAQVGDSYSRLQQRRERRALHQLKRQHEEGAGRRRKVLRLQEEQDGGSSDEDRAGPAPPGASDGVDIQD
VKFKLRHDLAQLQAAASSAQDLSREQLALLKLVLGRGLYPQLAVPDAFNSSRKDSDQIFHTQAKQGAVLH
PTCVFAGSPEVLHAQELEASNCDGSRDDKDKMSSKHQLLSFVSLLETNKPYLVNCVRIPALQSLLLFSRS
LDTNGDCSRLVADGWLELQLADSESAIRLLAASLRLRARWESALDRQLAHQAQQQLEEEEEDTPVSPKEV
ATLSKELLQFTASKIPYSLRRLTGLEVQNMYVGPQTIPATPHLPGLFGSSTLSPHPTKGGYAVTDFLTYN
CLTNDTDLYSDCLRTFWTCPHCGLHAPLTPLERIAHENTCPQAPQDGPPGAEEAALETLQKTSVLQRPYH
CEACGKDFLFTPTEVLRHRKQHV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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