CCDS Home FTP Process Releases & Statistics
Collaborators EBI HGNC MGI NCBI
Contact Us email CCDS
Genome Displays Related Resources Gene HomoloGene MANE RefSeq
|
|
Report for CCDS22643.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
22643.1 |
Public |
Mus musculus |
8 |
Cog8 |
23 |
108 |
98 |
|
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 22643.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
|
|
EBI |
ENSMUST00000034391.3 |
ENSMUSP00000034391.3 |
Accepted |
alive |
|
|
|
EBI |
ENSMUST00000095517.11 |
ENSMUSP00000093173.5 |
Accepted |
alive |
|
|
|
NCBI |
NM_139229.4 |
NP_631975.3 |
Accepted |
alive |
|
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_631975.3 |
640 |
Q9JJA2 |
640 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 22643.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1923 nt): ATGGCGGCCGCTCTCCCTCTCCAGCCCTCCACGACCGCTTCGGCCACGACGACAGCCACGGCCGTCGCGC TGGGGGAGGTGGAAGATGAGGGCCTCCTGGCGTCGCTATTCCGGGACCGCTTCCCCGAAGCTCAGTGGCG TGAGAAGCCCGACGTGGGCCGCTACCTCCGGGAGCTGAGCGGCTCCGGGCTGGACCGGCTGCGGCGCGAA CCCGAGCGCTTGGCGGAAGAGCGGGCCCAGCGGCTGCAGCAGACGCGCGACCTGGCTTTCGCCAACTACA AGACGTTCATTCGCGGGGCCGAGTGCACCGAGCGCATCCACCGGCTCTTCGGCGACGTGGAGGCGTCCCT CGGGCGCCTGCTCGACCGTCTGCCCCGCTTCCAGCAGAGCTGCAGGAACTTTGTGAAGGAAGCTGAGGAG ATCAGCTCCAGCCGCCGCATGAACACGCTGACTCTAAACCGGCACACAGAAATCCTGGAGATTTTAGAGA TACCCCAGCTTATGGACACGTGTGTCCGAAACAGCTATCATGAAGAGGCGCTGGAGCTTGCCGCCTATGT ACGGCGACTGGAAAGGAAGTACTCCTCCATCCCCGTTATCCAGGGCATTGTGAATGAAGTGCGCCAGTCC ATGCAGCTGATGCTAAGCCAGCTGATCCAACAACTGAGGACTAACATCCAGCTCCCAGCCTGCCTCCGTG TCATAGGCTATCTTCGGCGCATGGATGTCTTCACTGAGGCTGAGTTGAGGGTGAAATTTCTTCAGGCTCG GGATGCTTGGCTCCGCTCCATCCTGACTGCCATCCCTAATGATGATCCTTACTTCCACATCACAAAAACC ATTGAGGCTTGCCGGGTCCATCTCTTTGATATCATCACCCAGTACCGTGCTATTTTCTCAGATGAGGACC CCCTGCTGCCACCTGCCATGGGCGAGTACACTGTGAATGAGGGTGCCATCTTCCATGGATGGGTGCTGCA GAAAATCTCACAGTTCCTGCAGGTGCTAGAGACTGACCTTTACCGGGGTATAGGAGGCCGCTTGGACTCT CTGCTTGGCCAGTGCATGTACTTTGGGCTGTCCTTTAGCCGGGTGGGGGCTGATTTCCGCGGCCAGTTGG CTCCTGTTTTCCAGAGGGTGGCAATCAGCACTTTCCAGAAAGCAGTTGAAGAAGCAGTGGAGAAATTCCA GGATGAAATGACTTCATACACCCTCATCTCGACTGCAGCCATCCTGGGCAGCAGTAACACGCCTGCCACA GTACCAGCCACACAACCAGGCACGCTGCAGCCACCGATGGTGCTCTTAGACTTCCCGCCTCTTGCCTGTT TCCTCAACAACATTTTGGTTGCTTTCAATGATTTACGTCTCTGTTGCCCTGTGGCTCTAGCACAGGATGT GACTGGGACCTTGGAAAATGCCCTTACCAAGGTAACCAAAACAATTCTGGCATTCCATCGAGCCGAAGAG GCTGTGTTCAGCAGTGGGGAGCATGAGATCTTTGTCCAGTTCTGCACTGCCTTCCTGGAAGACCTTGTTC CTTATTTGAACCGCTGTCTTCAAGTCCTTTTCCCACCAGCTCAGATAGCCCAGACTTTAGGCATTTCACC CACCCAGCTCTCTAAGCACGGAAACCTTGGACACGTGAACATCAGCGCCATCCAGGAACCTCTCGCCTTT ATTTTGCCTAAGAGAGAAACAGTTTTCTGTTTAGATGAGCAGGAGCTGGGGCCGGACCTCGTGGCCCCAG CTCCAGAGCTCCCTGCGGAGCAGCGGAGCATGGAGCCTGTAACAGAGAAGAGGGAACCAGGGGAGCCGCT GCCTCAGGAGCCCATGGAGGGGGAGCCGCTGCCAGCCGAGCCACCGAGTGAGGGAGGAGCCATAGGCAGT GTCCCCTGCCCGCAGCCTGGGGAGCAGCCCTGA
Translation (640 aa): MAAALPLQPSTTASATTTATAVALGEVEDEGLLASLFRDRFPEAQWREKPDVGRYLRELSGSGLDRLRRE PERLAEERAQRLQQTRDLAFANYKTFIRGAECTERIHRLFGDVEASLGRLLDRLPRFQQSCRNFVKEAEE ISSSRRMNTLTLNRHTEILEILEIPQLMDTCVRNSYHEEALELAAYVRRLERKYSSIPVIQGIVNEVRQS MQLMLSQLIQQLRTNIQLPACLRVIGYLRRMDVFTEAELRVKFLQARDAWLRSILTAIPNDDPYFHITKT IEACRVHLFDIITQYRAIFSDEDPLLPPAMGEYTVNEGAIFHGWVLQKISQFLQVLETDLYRGIGGRLDS LLGQCMYFGLSFSRVGADFRGQLAPVFQRVAISTFQKAVEEAVEKFQDEMTSYTLISTAAILGSSNTPAT VPATQPGTLQPPMVLLDFPPLACFLNNILVAFNDLRLCCPVALAQDVTGTLENALTKVTKTILAFHRAEE AVFSSGEHEIFVQFCTAFLEDLVPYLNRCLQVLFPPAQIAQTLGISPTQLSKHGNLGHVNISAIQEPLAF ILPKRETVFCLDEQELGPDLVAPAPELPAEQRSMEPVTEKREPGEPLPQEPMEGEPLPAEPPSEGGAIGS VPCPQPGEQP
|