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Report for CCDS22578.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22578.1 Public Mus musculus 8 Cmtm4 23 108 98 CCDS HistoryNCBI Gene:97487Re-query CCDS DB by CCDS ID:22578.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22578.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179802.1 ENSMUSP00000137332.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179802.1Link to Ensembl Protein Viewer:ENSMUSP00000137332.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179802Re-query CCDS DB by Protein ID:ENSMUSP00000137332
Original member Current member NCBI NM_153582.5 NP_705810.2 Accepted alive Link to Nucleotide Sequence:NM_153582.5Link to Protein Sequence:NP_705810.2Re-query CCDS DB by Nucleotide ID:NM_153582Re-query CCDS DB by Protein ID:NP_705810Link to BLAST:NP_705810.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705810.2 208 Q8CJ61 208 100% 0 0

Chromosomal Locations for CCDS 22578.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 104355127 104355291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104356262 104356360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104357698 104357874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104395451 104395636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGCGGGGCGGCGAGGAGCTGGACGGCTTCGAGGGCGAGGCCTCGAGCACCTCCATGATCTCGGGCGCCA
GCAGCCCGTACCAACCCACCACCGAGCCGGTGAGCCAGCGCCGCGGGCTGGCCGGCCTGCGCTGCGACCC
GGACTACCTGCGCGGCGCGCTCGGCCGCCTCAAGGTCGCCCAAGTGATTCTGGCCTTGATTGCATTTATC
TGCATCGAGACTATCATGGAGTGCTCCCCGTGCGAAGGCCTCTACTTCTTTGAGTTCGTAAGCTGCAGTG
CATTTGTGGTGACTGGGGTCCTGCTGATTCTCTTCAGCCTCAACCTTCATATGAGGATCCCCCAGATCAA
CTGGAATCTAACAGATTTGGTCAACACTGGACTCAGCACTTTCTTTTTCTTTATCGCCTCAATCGTGTTG
GCTGCTCTAAACCATAAAACCGGAGCGGAAATTGCTGCCGTGATATTTGGCTTCTTGGCAACAGCAGCCT
ATGCAGTGAGCACATTCCTGGCCATGCAGAAATGGAGAGTCAGCGTCCGCCAGCAGAGCACTAATGACTA
CATCCGAGCTCGCACCGAGTCGAGAGATGTGGACAGCCGCCCTGAGATCCAGCGCCTGGACACATGA

Translation (208 aa):
MRGGEELDGFEGEASSTSMISGASSPYQPTTEPVSQRRGLAGLRCDPDYLRGALGRLKVAQVILALIAFI
CIETIMECSPCEGLYFFEFVSCSAFVVTGVLLILFSLNLHMRIPQINWNLTDLVNTGLSTFFFFIASIVL
AALNHKTGAEIAAVIFGFLATAAYAVSTFLAMQKWRVSVRQQSTNDYIRARTESRDVDSRPEIQRLDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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