NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49098.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49098.1 Public Mus musculus 12 Exd2 23 108 98 CCDS HistoryNCBI Gene:97827Re-query CCDS DB by CCDS ID:49098.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49098.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038185.9 ENSMUSP00000043049.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038185.9Link to Ensembl Protein Viewer:ENSMUSP00000043049.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000038185Re-query CCDS DB by Protein ID:ENSMUSP00000043049
Original member Current member NCBI NM_133798.3 NP_598559.2 Accepted alive Link to Nucleotide Sequence:NM_133798.3Link to Protein Sequence:NP_598559.2Re-query CCDS DB by Nucleotide ID:NM_133798Re-query CCDS DB by Protein ID:NP_598559Link to BLAST:NP_598559.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598559.2 650 Q8VEG4-1 650 100% 0 0

Chromosomal Locations for CCDS 49098.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 80475769 80476188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80480455 80480711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80484246 80484372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80489402 80489733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80490781 80490887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80491095 80491230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80492542 80492898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80496781 80496997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1953 nt):
ATGTCTAGACAAAATTTAGTGGCTTTGACAGTGACCACCCTTCTGGGTGTGGCCATGGGGGGATTTGTCC
TGTGGAAAGGCATCCAGCGTAGATGGAGTAAGACAAGCAGAGTGATGCAGCAGCAGCCTCAGCAGCCACA
GCAGCCGCAGCAGCCGCAGCCACAGCCACAGCCACAGCCACAGCCACAGCCAGAGCATCCACAGCCACAG
CAGCAAGTGCCTGGTGGGAGGGAGTGGCCCCCTCCAGAAGATGACCAGCTACCCTTTGGTGCCCTGAGAG
CACCCAGAGCCTCATGGGAGGAGAGGATACTCCAGGCAGAGGTGGTGACGGTATCTCAGGAGGCAGAGTG
GAATCAAATCCAGCCCTTTCTTAAAAGAGAGTTGGAAGATTTTCCTGTACTTGGAATTGACTGTGAATGG
GTGAATTTGGAAGGCAAAGCCAGTCCTTTGTCACTCCTACAGATGGCTTCCCCAAGTGGCTTCTGTGCAC
TGGTTCGCTTGCCCAGGCTGATATATGGAGGCAGAACACTACCCAGGACGCTTTTGGATATATTGGCAGA
TGGTGCTATCTTAAAAGTAGGAGTGGGATGTTCAGAAGATGCCAACAAGCTTCTACAGGATTATGGTCTC
ATTGTCAGGGGATGTCTGGACCTTCGCTACCTAGCCATGAAGCAGGGAAACAATATACTCTGTAATGGGC
TTAGCCTGAAATCACTTGCTGAGACTATTTTGAACTTCCCACTTGACAAGTCCCTTCTACTTCGTTGCAG
CAACTGGGATGCTGAGAATCTTACTGAAGACCAGGTAACTTATGCTGCCAGGGATGCGCAGATTTCAGTG
GCTCTCTTTCTCCATCTTCTTGGATACCCTTTCTCTAGAGATTCCTATGAAGAGGAAAGTACGGACCAAA
TCAACTGGCAAAAAGCCTTGGAGAGATGCAGGAATATGGTAGACATCCCATTCCGAAGCAAAGGACTTGG
CCGGCTGGTTGAAGAGGTTAATGGGGAAGCACTGGAGTCGCAGCTGAAGCCGAGAAATAGGAAGGCTAAG
ACTGATAGAATGGTGCCAGGCAACAACCAAGGGAGAGACCCCAGGAAGCATAAGAGGAAGCCCCTGGGGG
TGGGCTATTCTGCCAGAAAATCCCCTCTCTATGATAACTGCTTCCTCCAAGCTCCTGATGGACAGCCCTT
GTGCACCTGTGACCGCAGGAAAGCTCAGTGGTACCTGGACAAAGGCATTGGAGAGCTGGTGAGTAAAGAA
CCTTTTGTGGTCAGGCTACAGTTTGAACCTGCAGGAAGACCTGAGTCCCCAGGAGATTATTACTTGATGG
TTAAAGAGAATCTGTGTGTTGTCTGTGGCAAGACAGATACCTACATCCGGAAAAATATAATTCCACATGA
GTACCGCAAGCATTTCCCTATTGAGATGAAGGACCACAACTCCCATGATGTGCTGTTGCTCTGCACCTCC
TGCCATGCCATCTCTAACTACTATGACAACCATCTGAAGCAACAGCTGGCCAAGGAGTTCCAGGCTCCCA
TTGGCTCAGAGGAGGGCCTACGCCTGCTGGAAGACTTAGAGCGGAGACAGGTGCGTTCTGGAGCCAGAGC
CCTGCTCAACGCAGAGAGCCTACCTGCTCATCGGAAAGAAGAGCTGCTGCACGCACTCAGGGAGTTTTAC
AACACAGATATTATTACAGAGGAGATGCTTCACGAGGCCGCCAGCCTGGAGACCAGGATATACAATGAAA
GTTATATTCCTCATGGGCTAAAGGTGGTACAGCGTCACACCGAGGGTGGGCTGCGCTCCCTCATGCAGCT
GGAGAGCCGCTGGCGTCAGCACTTCCTGGACTCCATGCAGCCTAAGCACCTGCCCCAGCAGTGGTCAGTG
GACCACAACCATCAGAAGCTGCTCCGAAAGTACGGGGATGACCTTCCCATCAAGCTGTCATGA

Translation (650 aa):
MSRQNLVALTVTTLLGVAMGGFVLWKGIQRRWSKTSRVMQQQPQQPQQPQQPQPQPQPQPQPQPEHPQPQ
QQVPGGREWPPPEDDQLPFGALRAPRASWEERILQAEVVTVSQEAEWNQIQPFLKRELEDFPVLGIDCEW
VNLEGKASPLSLLQMASPSGFCALVRLPRLIYGGRTLPRTLLDILADGAILKVGVGCSEDANKLLQDYGL
IVRGCLDLRYLAMKQGNNILCNGLSLKSLAETILNFPLDKSLLLRCSNWDAENLTEDQVTYAARDAQISV
ALFLHLLGYPFSRDSYEEESTDQINWQKALERCRNMVDIPFRSKGLGRLVEEVNGEALESQLKPRNRKAK
TDRMVPGNNQGRDPRKHKRKPLGVGYSARKSPLYDNCFLQAPDGQPLCTCDRRKAQWYLDKGIGELVSKE
PFVVRLQFEPAGRPESPGDYYLMVKENLCVVCGKTDTYIRKNIIPHEYRKHFPIEMKDHNSHDVLLLCTS
CHAISNYYDNHLKQQLAKEFQAPIGSEEGLRLLEDLERRQVRSGARALLNAESLPAHRKEELLHALREFY
NTDIITEEMLHEAASLETRIYNESYIPHGLKVVQRHTEGGLRSLMQLESRWRQHFLDSMQPKHLPQQWSV
DHNHQKLLRKYGDDLPIKLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH