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Report for CCDS49227.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49227.1 Public Mus musculus 13 Serpinb6c 23 108 98 CCDS HistoryNCBI Gene:97848Re-query CCDS DB by CCDS ID:49227.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49227.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110273.8 ENSMUSP00000105902.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110273.8Link to Ensembl Protein Viewer:ENSMUSP00000105902.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110273Re-query CCDS DB by Protein ID:ENSMUSP00000105902
Original member Current member EBI ENSMUST00000172184.1 ENSMUSP00000127619.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172184.1Link to Ensembl Protein Viewer:ENSMUSP00000127619.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172184Re-query CCDS DB by Protein ID:ENSMUSP00000127619
Original member NCBI NM_148942.2 NP_683744.2 Updated not alive Link to Nucleotide Sequence:NM_148942.2Link to Protein Sequence:NP_683744.2Re-query CCDS DB by Nucleotide ID:NM_148942Re-query CCDS DB by Protein ID:NP_683744
Current member NCBI NM_148942.3 NP_683744.2 Accepted alive Link to Nucleotide Sequence:NM_148942.3Link to Protein Sequence:NP_683744.2Re-query CCDS DB by Nucleotide ID:NM_148942Re-query CCDS DB by Protein ID:NP_683744Link to BLAST:NP_683744.2

Chromosomal Locations for CCDS 49227.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 33879931 33880332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33880622 33880777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33893804 33893946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33895269 33895386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33897344 33897496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33899262 33899429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGATGGATCCTCTGCTGGAAGCAAATGCTACTTTTGCCTTAAACCTTTTAAAAATATTGGGTGAAGACA
GATCCAAAAATGTATTTTTATCACCCATAAGCATCTCTTCAGCGCTGGTCATGGTCTTATTGGGGGCAAA
AGGAACCACTGCGATCCAGATAACTCAGGCACTGTCTTTGGGTAAATGCAGCAGCAGTGAAGATGGAGAC
GTCCACCAGGGCTTCCAGTTACTTCTCAGCGAAGTGAACAAGACTGGCACACAGTACTCGCTCAAAGCAG
CCAACAGGCTCTTCGGGGAAAAGACTTTTGATATCCTAGCATCTTTTAAAGATTCCTGCCACAAGTTCTA
TGAAGCAGAGATGGAAGAGCTGGACTTTAAGGGTGCTACAGAGCAGTCCCGACAGCACATCAACACCTGG
GTAGCCAAAAAGACAGAAGATAAAATCAAAGAGTTGCTATCTCCAGGTACAATACATTCAAACACTCCAC
TGATCCTCGTGAATGCTGTCTACTTCAAAGGAAAGTGGGAGAAGCAGTTTAACAAAGAGGACACCAGGGA
GATGCCATTCAAAGTCAGCAAGAATGAGGAGAAACCTGTGCAAATGATGTTTCAGAAGTCTACCTTTAAG
ATGACCTATGTGGAAGAGATATCCACCAAGATTTTGTTGCTTCCCTATGTTGGCAATGAGCTGAACATGA
TCATCATGCTTCCAGATGAACACGTTGAACTGAGTACGGTGGAAAAGGAAATAACTCATGAGAAATTTAT
AGAGTGGACGAGGCTGGACAGGATGAAAGGAGAAAAGGTGGAGGTTTTCCTCCCATGGTTTAAGCTGGAG
GAGAACTATGACATGAAGGATGTCCTCTGCAAGCTGGGCATGACTGATGCCTTTGAGGAGGGCAGAGCAG
ACTTTTCTGGAATATCTTCCAAGCAAGGCTTGTTTCTGTCCAATGTCATACATAAATCTGTTGTGGAGGT
GAATGAGGAAGGCTCAGAGGCTACAGCTGCCACTACAATTGTTCTGAAGGGGTCATCACGGTCCACCCCT
TGTTTCTGTGTTAACCGCCCCTTCATTTTCTTCATTCAGCACATTAAGACCAATGAGATTCTGTTCCTTG
GCCGGCTCTCCTCTCCCTGA

Translation (379 aa):
MMDPLLEANATFALNLLKILGEDRSKNVFLSPISISSALVMVLLGAKGTTAIQITQALSLGKCSSSEDGD
VHQGFQLLLSEVNKTGTQYSLKAANRLFGEKTFDILASFKDSCHKFYEAEMEELDFKGATEQSRQHINTW
VAKKTEDKIKELLSPGTIHSNTPLILVNAVYFKGKWEKQFNKEDTREMPFKVSKNEEKPVQMMFQKSTFK
MTYVEEISTKILLLPYVGNELNMIIMLPDEHVELSTVEKEITHEKFIEWTRLDRMKGEKVEVFLPWFKLE
ENYDMKDVLCKLGMTDAFEEGRADFSGISSKQGLFLSNVIHKSVVEVNEEGSEATAATTIVLKGSSRSTP
CFCVNRPFIFFIQHIKTNEILFLGRLSSP


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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