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Report for CCDS15584.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15584.1 Public Mus musculus 1 Lbr 23 108 98 CCDS HistoryNCBI Gene:98386Re-query CCDS DB by CCDS ID:15584.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15584.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005003.11 ENSMUSP00000005003.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005003.11Link to Ensembl Protein Viewer:ENSMUSP00000005003.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000005003Re-query CCDS DB by Protein ID:ENSMUSP00000005003
Original member NCBI NM_133815.2 NP_598576.2 Updated not alive Link to Nucleotide Sequence:NM_133815.2Link to Protein Sequence:NP_598576.2Re-query CCDS DB by Nucleotide ID:NM_133815Re-query CCDS DB by Protein ID:NP_598576
Current member NCBI NM_133815.3 NP_598576.2 Accepted alive Link to Nucleotide Sequence:NM_133815.3Link to Protein Sequence:NP_598576.2Re-query CCDS DB by Nucleotide ID:NM_133815Re-query CCDS DB by Protein ID:NP_598576Link to BLAST:NP_598576.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598576.2 626 Q3U9G9 626 100% 0 0

Chromosomal Locations for CCDS 15584.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 181816858 181817018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181817265 181817387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181817489 181817569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181818840 181819008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181819864 181819989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181820674 181820777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181821436 181821627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181825622 181825676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181828712 181828908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181831542 181831734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181832149 181832232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181836058 181836288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181838378 181838542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1881 nt):
ATGCCAAGTAGGAAGTTTGTTGAGGGTGAAGTGGTCAGAGGCCGATGGCCTGGGAGCTCCCTTTATTATG
AAGTAGAGATTCTGAGCCACGACAACAAATCCCAGCTCTACACTGTAAAATACAAAGATGGCACCGAACT
GGAACTGAAGGAGAGTGATATCAAGCCTTTAAAATCCTTTAAGCAAAGAAAAAGTGGCTCGATTTCCAGC
TCTCCCTCTCGACGCCGTGGCAGCCGCAGCCGCAGCCGCTCAAGATCACGTTCCCGATCCCCGGGCAGAG
CACCGAAAGGCTCCAGAAGATCCGTCTCTGCTTCCCATGAGGGTGACGTGAAGGAGAAGAAGGAGAAGGA
GATGAGGAGGGAAATTCTGCAAGTTAAGCTGACTCCGCTTGTGTTGAAGCCGTTCGGAAACAGCGTCAGC
GTGTACAACGGGGAGCCCGAACACATGGAGAAGAACGCTACGCCGTATAAAGACAAGCAGGAAAGAATCA
TTTTGTCAACAGAAGACAGATATATAGTTACACAGTACAGCCTTCGTCCCAGGAGAGAAGAGGTCAAAGC
CAAAGAAATAGAGTCTGAGGAACAAAACCTTGTCACCAAAGGACCCGCACCTTTGGGAACCTTTCAAGTG
ACCACTCCACAGAGGAAGGACTTGGAGTTTGGAGGAGTACCTGGTGCGGTCCTCATCATGCTGGGCCTGC
CCGCCTGCGTCCTCTTGCTGCTGCTGCAGTGCAGGCAGAAGGACCCGGGGCTGCTCCACTTCCCTCCACC
TCTGCCGGCTCTCCACGAGCTGTGGGAACCCAGGGTGTGCGGCGTTTACCTCCTCTGGTTTTTCGTTCAA
GCTCTCTTCCACCTTCTACCAGTTGGGAAGGTTGCAGAAGGAACACCTCTTGTTGATGGAAGAAGACTCC
AGTATAGACTGAATGGATTGTATGCCTTCATTCTGACATCTGCAGCCCTGGGAGCAGCTGTCTTCTGGGG
TGTTGAGCTGTGCTACCTGTACACTCACTTCCTGCAGTTGGCACTGGCAGCCACCGGGTTCTCCGTGCTC
CTGAGTGCTTACCTCTATGTTCGCTCTCTGCGAGCCCCGAGGGAGGAGCTGTCGCCAGCCAGTTCCGGAA
ATGCTGTCTACGACTTCTTCATTGGCCGAGAGTTAAACCCGCGACTTGGTGCTTTCGATCTCAAGTTCTT
TTGTGAGTTGCGCCCTGGATTGATTGGATGGGTGGTTATTAACTTAGTGATGCTTCTGATGGAAATGAAA
ATTCAGGAGCGAGCTGCTCCGTCCTTGGCAATGATCTTGGTTAACAGTTTCCAGCTCTTATATGTGGTGG
ACGCCCTCTGGAATGAGGAAGCACTGCTGACCTCCATGGACATCATGCACGACGGCTTTGGCTTCATGCT
GGCCTTTGGGGATTTAGTGTGGGTTCCATTTACCTACAGCCTCCAGGCCTTTTACCTGGTCAGCCATCCC
CATGACTTGTCCTGGCCATTGGCTTCTGTCATCATTGCTCTGAAATTGTGTGGATATGTAATCTTCCGTT
GTGCAAACTCTCAGAAAAATGCATTCCGGAAGAATCCCACTGATCCAAAGCTTGCACATTTGAAGACCAT
TCATACTTCCACGGGGAAAAGTCTGCTTGTTTCCGGATGGTGGGGCTTTGTTCGCCATCCCAATTACTTG
GGTGACCTCATCATGGCTCTGGCGTGGTCCCTCCCATGTGGTTTCAACCACCTCCTGCCATACTTCTACA
TTATCTACTTCACCGCCTTGCTTATCCATCGAGAGGCCCGGGATGAACACCAGTGCAGGAGGAAGTACGG
CCTGGCCTGGGAGAAGTACTGCCAGCGAGTGCCCTACCGCATATTCCCCTACATTTACTGA

Translation (626 aa):
MPSRKFVEGEVVRGRWPGSSLYYEVEILSHDNKSQLYTVKYKDGTELELKESDIKPLKSFKQRKSGSISS
SPSRRRGSRSRSRSRSRSRSPGRAPKGSRRSVSASHEGDVKEKKEKEMRREILQVKLTPLVLKPFGNSVS
VYNGEPEHMEKNATPYKDKQERIILSTEDRYIVTQYSLRPRREEVKAKEIESEEQNLVTKGPAPLGTFQV
TTPQRKDLEFGGVPGAVLIMLGLPACVLLLLLQCRQKDPGLLHFPPPLPALHELWEPRVCGVYLLWFFVQ
ALFHLLPVGKVAEGTPLVDGRRLQYRLNGLYAFILTSAALGAAVFWGVELCYLYTHFLQLALAATGFSVL
LSAYLYVRSLRAPREELSPASSGNAVYDFFIGRELNPRLGAFDLKFFCELRPGLIGWVVINLVMLLMEMK
IQERAAPSLAMILVNSFQLLYVVDALWNEEALLTSMDIMHDGFGFMLAFGDLVWVPFTYSLQAFYLVSHP
HDLSWPLASVIIALKLCGYVIFRCANSQKNAFRKNPTDPKLAHLKTIHTSTGKSLLVSGWWGFVRHPNYL
GDLIMALAWSLPCGFNHLLPYFYIIYFTALLIHREARDEHQCRRKYGLAWEKYCQRVPYRIFPYIY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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