NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15361.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15361.1 Public Mus musculus 1 Trmt1l 23 108 98 CCDS HistoryNCBI Gene:98685Re-query CCDS DB by CCDS ID:15361.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15361.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065625.11 ENSMUSP00000068309.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065625.11Link to Ensembl Protein Viewer:ENSMUSP00000068309.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000065625Re-query CCDS DB by Protein ID:ENSMUSP00000068309
Original member Current member NCBI NM_026876.4 NP_081152.2 Accepted alive Link to Nucleotide Sequence:NM_026876.4Link to Protein Sequence:NP_081152.2Re-query CCDS DB by Nucleotide ID:NM_026876Re-query CCDS DB by Protein ID:NP_081152Link to BLAST:NP_081152.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081152.2 728 A2RSY6-1 728 99.8626% 0 1

Chromosomal Locations for CCDS 15361.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 151428877 151429102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151433794 151433904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151435728 151435841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151439516 151439580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151440806 151440935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151442587 151442710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151443247 151443326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151448254 151448497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151449900 151450112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151452048 151452238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151453077 151453155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151453885 151454051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151454978 151455040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151457463 151457589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151457682 151457934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2187 nt):
ATGGAGAATATGGCGGAGGAGGAGCTGCTACCCCAGGAGAAGGAGGAGGCCCAGGTCAGGGTCCCGACCC
GGGCCCCGGATTCGGCTCCGGTCCCAGCTCCGGCCGCAGATACGGCTCTGGACTCGGCTCCGACGCCGGA
CTCGGATCCAGCCCCAGCCCTTGCCCCGGCCCCGGCTCCGGCCCTGTCCCCGTCCCTAGCCTCTGTCCCC
GAGGAGGCTGAAAGCAAGAGACACATCTCAATTCAAAGGCGGCTTGCTGACCTGGAGAAGTTAGCTTTTG
GGACTGAAGGAGATGTTGACTCTGCCAGTTCATTGAACTCAGATAATCCAGGCACAGAAAACAGTCAAAC
TTGCCCGCTGTGTCCTAAGGAAAAGTTCAGAGCTTATAGTAGTCACAAGCTTCGTCGACACCTTCAGAAT
TTACACTGGAAAATCTCAGTTGAATTTGAAGGCTACAGAATGTGCATCTGTCACTTAGCCTGCCGCCCGG
TGAAGCCAACCATCGTTGGAGAACAGATATCCAGTAAACTGGGCGCCCATTATCACTGCATCATTTGTTC
AGCAACAATCACCAGGAGGACTGACATGCTAGGGCATGTTAAGCGCCATGTCAACAAAGGGGAAACTAAA
TCCAGGTACATTGCTGCTTCTACTGCCAAATCATCTAATGAGATTTTGAAGGAGACAGACACAGACATAC
AAGTTTTTCCTAACTACTCTATACCTCAGAAAACAGATTCATATTTTAATCCCAAAATGAAGCTAAATCG
TCAGATAATATTCTGTACATTGGCTGCTTTGGCTAAGGAACGAAAACCTTTGGAGTGTTTAGATGCCTTT
GGAGCCACTGGAATAATGGGATTACAGTGGGCAAAGCACCTTGGAAATGCAGTCAAAGTTACAATTAATG
ACTTGAATGAAAACTCTGTGACTTTGATTCAGAAAAACTGCCACTTAAACAAGTTAAAAGTGGTAGTGGA
CAGCGAGGAAAAGGAAGAGGGTGATGCCCTCGAAGACGACGGCACTCTGGGGGATATCCAGGTGACCAGG
ATGGACGCCAATGTTCTGATGCACCTCAGATCTTTTGACTTTATACATCTGGATCCCTTTGGAACGTCAG
TGAACTACCTCGACTCTGCGTTCAGAAATGTAAGGAACCTTGGCATAGTGTCAGTGACTTCTACAGACAT
CAGCTCCTTGTATGCCAAGGCACAGCATGTTGCCCGGCGTCACTACGGATGTAACATTGTCCGAACAGAG
TATTACAAGGAGCTGGCGGCCAGAATTGTCGTAGCTGCAGTGGCAAGAGCTGCAGCACGGTGCAACAAAG
GTATAGAAGTGCTGTTTGCGGTGGCCCTGGAACACTTCGTGTTGGTAGTTGTGAGGGTCTTAAGAGGCCC
TACTTCAGCGGACGAGACTGCCAAGAAAATCCAGTACCTGATCCACTGCCAGTGGTGTGAAGAGAGGATT
TTTCAGAAGGATGGAAACATGGTGGAAGAAAACCCATACAGACAGCTGCCCTGTAATTGTCATGGGAGCA
TGCCTGGCAAGACAGCGATAGAACTCGGGCCTCTGTGGTCAAGTTCCCTTTTCAATACTGGATTCCTCAA
AAGGATGCTATTTGAATCTATTCACCATGGTTTGGATGACATTCAACCCCTAATAAAGACATTAATCTTT
GAATCAGAGTGTACCCCCCAAAGCCAGTGTTCAACTCATGCACCTTCAAATACCAACAAGCAAGAAGAAA
ATGGCGTATTTGTTAAAACCACCGATGATACCACAATAGATATTTACAGTGCACAGGGCAAGAGAAAAAG
TAATGAGATGGCCATTAACCTAGCCAAAAAGCAGAAGACCGACGCCAGCACGGCTCACCCGCCCTTTTAC
TACAACATCCACAGGCACAGCATCAAAGGGATGAACATGCCGAAGTTAAAAAAATTTTTGTGCTGTCTTT
CGCAAGCAGGCTTTCGAGTAAGCCGAACTCACTTTGACCCAATGGGCATCCGTACCGATGCCCCTCTGAT
GCAGTTTAAATCCATCTTGCTAAAGTACAGCACCCCCACTTACACTGGAGCACAATCAGAAGGCCAGATG
CCGCCAGCAGCTGAGGACACGGTCACCGACAGGGTTGAGATGTCCGTGAGTGACAAAGCGGAAGCGAGTG
GCTGCAGGAGATGGTGA

Translation (728 aa):
MENMAEEELLPQEKEEAQVRVPTRAPDSAPVPAPAADTALDSAPTPDSDPAPALAPAPAPALSPSLASVP
EEAESKRHISIQRRLADLEKLAFGTEGDVDSASSLNSDNPGTENSQTCPLCPKEKFRAYSSHKLRRHLQN
LHWKISVEFEGYRMCICHLACRPVKPTIVGEQISSKLGAHYHCIICSATITRRTDMLGHVKRHVNKGETK
SRYIAASTAKSSNEILKETDTDIQVFPNYSIPQKTDSYFNPKMKLNRQIIFCTLAALAKERKPLECLDAF
GATGIMGLQWAKHLGNAVKVTINDLNENSVTLIQKNCHLNKLKVVVDSEEKEEGDALEDDGTLGDIQVTR
MDANVLMHLRSFDFIHLDPFGTSVNYLDSAFRNVRNLGIVSVTSTDISSLYAKAQHVARRHYGCNIVRTE
YYKELAARIVVAAVARAAARCNKGIEVLFAVALEHFVLVVVRVLRGPTSADETAKKIQYLIHCQWCEERI
FQKDGNMVEENPYRQLPCNCHGSMPGKTAIELGPLWSSSLFNTGFLKRMLFESIHHGLDDIQPLIKTLIF
ESECTPQSQCSTHAPSNTNKQEENGVFVKTTDDTTIDIYSAQGKRKSNEMAINLAKKQKTDASTAHPPFY
YNIHRHSIKGMNMPKLKKFLCCLSQAGFRVSRTHFDPMGIRTDAPLMQFKSILLKYSTPTYTGAQSEGQM
PPAAEDTVTDRVEMSVSDKAEASGCRRW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH