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Report for CCDS44020.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44020.1 Public Homo sapiens X HCFC1 24 110 108 CCDS HistoryNCBI Gene:3054Re-query CCDS DB by CCDS ID:44020.1Re-query CCDS DB by GeneID:3054See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44020.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310441.12 ENSP00000309555.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000310441.12Link to Ensembl Protein Viewer:ENSP00000309555.7Re-query CCDS DB by Nucleotide ID:ENST00000310441Re-query CCDS DB by Protein ID:ENSP00000309555
Original member Current member NCBI NM_005334.3 NP_005325.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005334.3Link to Protein Sequence:NP_005325.2Re-query CCDS DB by Nucleotide ID:NM_005334Re-query CCDS DB by Protein ID:NP_005325Link to BLAST:NP_005325.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005325.2 2035 P51610-1 2035 100% 0 0

Chromosomal Locations for CCDS 44020.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 153949347 153949386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153949553 153949616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153950243 153950543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153950813 153950998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153951350 153951487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153951589 153951707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153951841 153952158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153952514 153952958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153953607 153953770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153954066 153955542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153956191 153956411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153956625 153956763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153956918 153957060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153957314 153957533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153957782 153957886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153958025 153958249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153958569 153958766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153959331 153959491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153959802 153960161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153960235 153960414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153961542 153961648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153962222 153962306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153963225 153963433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153964124 153964284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153964578 153964726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153970648 153970840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (6108 nt):
ATGGCTTCGGCCGTGTCGCCCGCCAACTTGCCAGCGGTGCTTCTGCAGCCCCGCTGGAAGCGAGTGGTGG
GCTGGTCGGGTCCGGTGCCACGGCCCCGCCACGGCCACCGCGCCGTGGCCATCAAGGAGCTCATCGTGGT
GTTTGGCGGCGGCAACGAGGGAATAGTGGACGAACTGCACGTGTACAACACGGCAACCAACCAGTGGTTC
ATCCCAGCCGTGAGGGGGGACATTCCCCCTGGGTGTGCAGCCTATGGCTTCGTGTGTGACGGGACTCGCC
TCCTGGTGTTTGGTGGGATGGTGGAGTATGGGAAATACAGCAATGACCTCTACGAACTCCAGGCGAGCCG
GTGGGAGTGGAAGAGACTCAAAGCAAAGACGCCCAAAAACGGGCCCCCTCCGTGTCCTCGACTCGGGCAC
AGCTTCTCCCTTGTGGGCAACAAATGCTACCTGTTTGGGGGTCTGGCCAATGATAGCGAGGACCCAAAGA
ACAACATTCCAAGGTACCTGAATGACTTATATATCCTGGAATTACGGCCAGGCTCTGGAGTGGTAGCCTG
GGACATTCCCATCACTTACGGGGTCCTACCACCACCCCGGGAGTCACATACTGCCGTGGTCTACACCGAA
AAAGACAATAAGAAGTCCAAGCTGGTGATCTACGGCGGGATGAGTGGCTGCAGGCTGGGGGACCTGTGGA
CCCTAGATATTGACACCCTGACGTGGAATAAGCCCAGTCTCAGCGGGGTGGCGCCTCTTCCTCGCAGTCT
CCACTCGGCAACCACCATCGGAAATAAAATGTACGTGTTTGGTGGCTGGGTGCCTCTCGTCATGGATGAC
GTCAAAGTGGCCACACACGAGAAGGAGTGGAAGTGTACCAACACGCTGGCTTGTCTCAACCTGGATACCA
TGGCCTGGGAGACCATCCTGATGGATACACTGGAGGACAACATCCCCCGTGCTCGGGCTGGCCACTGCGC
AGTCGCCATCAACACCCGCCTGTACATTTGGAGTGGGCGTGACGGCTACCGCAAGGCCTGGAACAACCAG
GTCTGCTGCAAGGACCTCTGGTACCTAGAGACAGAAAAGCCACCACCCCCAGCCCGAGTACAACTGGTAC
GCGCCAACACCAACTCCCTGGAGGTGAGCTGGGGGGCAGTGGCAACAGCCGACAGCTACCTTCTCCAGCT
CCAGAAATATGACATTCCTGCCACGGCTGCTACTGCCACCTCCCCTACACCCAATCCGGTCCCATCTGTG
CCTGCCAACCCTCCCAAGAGCCCTGCCCCAGCAGCAGCCGCACCTGCTGTGCAGCCGCTGACCCAAGTAG
GCATCACGCTCCTGCCCCAGGCTGCCCCCGCACCCCCGACCACCACCACCATCCAGGTCTTGCCAACGGT
GCCTGGCAGCTCCATTTCTGTGCCCACCGCAGCCAGGACTCAAGGTGTCCCTGCTGTTCTCAAAGTGACC
GGTCCTCAGGCTACAACAGGAACTCCATTGGTCACCATGCGACCTGCCAGCCAGGCTGGGAAAGCCCCTG
TCACCGTGACCTCCCTTCCCGCCGGAGTGCGGATGGTTGTGCCAACACAGAGTGCCCAGGGAACGGTGAT
TGGCAGTAGCCCACAGATGAGTGGGATGGCCGCACTGGCCGCTGCGGCCGCTGCCACCCAGAAGATCCCC
CCTTCCTCGGCACCCACGGTGCTGAGTGTCCCAGCGGGTACCACCATCGTGAAGACCATGGCTGTGACAC
CTGGCACTACCACCCTCCCAGCCACTGTGAAGGTGGCCTCCTCGCCAGTCATGGTGAGCAACCCTGCCAC
TCGCATGCTGAAGACTGCAGCCGCCCAGGTGGGGACATCGGTTTCCTCCGCCACCAACACGTCTACCCGC
CCTATCATCACAGTGCACAAGTCAGGCACTGTGACAGTGGCCCAGCAAGCCCAGGTGGTGACCACAGTTG
TGGGCGGGGTCACCAAGACCATCACCCTGGTGAAGAGCCCCATCTCTGTCCCAGGAGGCAGTGCTCTGAT
TTCCAATCTGGGCAAAGTGATGTCGGTGGTCCAGACCAAACCAGTTCAGACTTCAGCAGTCACAGGCCAG
GCGTCCACGGGTCCTGTGACTCAGATCATCCAGACCAAAGGGCCCCTGCCAGCGGGAACAATCCTGAAGC
TGGTGACCTCAGCAGATGGCAAGCCCACCACCATCATCACTACCACGCAGGCCAGTGGGGCGGGGACCAA
GCCCACCATCCTGGGCATCAGCAGCGTCTCCCCCAGTACCACCAAGCCCGGCACGACCACCATCATCAAA
ACCATCCCCATGTCGGCCATCATCACCCAGGCGGGCGCCACGGGTGTGACCAGCAGTCCTGGCATCAAGT
CCCCCATCACCATCATCACCACCAAGGTGATGACTTCAGGAACTGGAGCACCTGCGAAAATCATCACTGC
TGTCCCCAAAATTGCCACTGGCCACGGGCAGCAGGGAGTGACCCAGGTGGTGCTTAAGGGGGCCCCGGGA
CAGCCAGGCACCATCCTCCGCACTGTGCCCATGGGGGGTGTTCGCCTGGTCACACCCGTCACCGTCTCCG
CCGTCAAGCCAGCCGTCACCACGTTGGTTGTGAAAGGCACCACAGGTGTCACGACCCTAGGCACAGTGAC
AGGCACCGTCTCCACCAGCCTTGCCGGGGCGGGGGGCCACAGCACTAGTGCTTCCCTGGCCACGCCCATC
ACCACCTTGGGCACCATTGCCACCCTCTCAAGCCAGGTGATCAACCCCACTGCCATCACTGTGTCGGCCG
CACAGACCACGCTGACAGCGGCAGGCGGGCTCACAACCCCAACCATCACCATGCAGCCCGTGTCCCAGCC
CACCCAGGTAACTCTGATCACGGCACCTAGTGGGGTGGAGGCCCAGCCTGTGCATGACCTCCCTGTGTCC
ATTCTGGCCTCCCCGACTACAGAACAGCCCACCGCCACAGTTACCATCGCCGACTCAGGCCAGGGTGATG
TGCAGCCTGGCACTGTCACCTTGGTGTGCTCCAACCCACCCTGTGAGACCCACGAGACTGGCACCACCAA
CACGGCCACCACTACTGTTGTGGCTAACCTTGGGGGACACCCCCAGCCCACCCAAGTGCAGTTCGTCTGT
GACAGACAGGAGGCAGCTGCTTCTCTTGTGACCTCGACTGTGGGCCAGCAGAATGGTAGCGTGGTCCGAG
TCTGTTCGAACCCGCCCTGCGAGACCCACGAGACGGGCACCACCAACACCGCCACCACCGCCACCTCCAA
CATGGCCGGGCAGCATGGCTGCTCAAACCCACCCTGCGAGACCCACGAGACGGGCACCACCAACACTGCC
ACTACAGCCATGTCGAGCGTCGGCGCCAACCACCAGCGAGATGCCCGTCGGGCCTGTGCAGCTGGCACCC
CTGCCGTGATCCGGATCAGTGTGGCCACTGGGGCGCTGGAGGCAGCCCAGGGCTCTAAGTCCCAGTGCCA
AACCCGCCAGACCAGCGCGACCAGCACCACCATGACTGTGATGGCCACCGGGGCCCCGTGCTCGGCCGGC
CCACTCCTTGGGCCGAGCATGGCACGGGAGCCCGGGGGCCGCAGCCCTGCTTTTGTGCAGTTGGCCCCTC
TGAGCAGCAAAGTCAGGCTGAGCAGCCCAAGCATTAAGGACCTTCCTGCGGGGCGCCACAGCCATGCGGT
CAGCACCGCTGCCATGACCCGTTCCAGCGTGGGTGCTGGGGAGCCCCGCATGGCACCTGTGTGCGAGAGC
CTCCAGGGTGGCTCGCCCAGCACCACAGTGACTGTGACAGCCCTGGAGGCACTGCTGTGCCCCTCGGCCA
CCGTGACCCAAGTCTGCTCCAACCCACCATGTGAGACCCACGAGACAGGCACCACCAACACCGCCACTAC
CTCGAATGCAGGCAGCGCCCAGAGGGTGTGCTCCAACCCGCCATGCGAGACCCACGAGACGGGCACCACC
CACACGGCCACCACCGCTACTTCAAACGGGGGCACGGGCCAGCCCGAGGGTGGGCAGCAGCCCCCTGCTG
GTCGCCCCTGTGAGACACACCAGACCACTTCCACTGGCACCACCATGTCGGTCAGCGTGGGTGCCCTGCT
TCCCGACGCCACTTCTTCCCACAGGACCGTGGAGTCTGGCCTAGAGGTGGCGGCGGCACCCAGCGTCACC
CCCCAGGCTGGCACCGCGCTGCTGGCTCCTTTCCCAACACAGAGGGTGTGCTCCAACCCCCCCTGTGAGA
CCCACGAGACGGGCACCACTCACACGGCCACCACTGTCACTTCCAACATGAGTTCAAACCAAGACCCCCC
ACCTGCTGCCAGCGATCAGGGAGAGGTGGAGAGCACCCAGGGCGACAGCGTGAACATCACCAGCTCCAGT
GCCATCACGACAACCGTGTCCTCCACACTGACGCGGGCTGTGACCACCGTGACGCAGTCCACACCGGTCC
CGGGCCCCTCTGTGCCGCCCCCAGAGGAACTCCAGGTGTCGCCAGGTCCTCGCCAGCAGCTGCCGCCACG
GCAGCTTCTGCAGTCGGCTTCCACAGCCCTGATGGGGGAGTCCGCCGAGGTCCTGTCAGCCTCCCAGACC
CCTGAGCTCCCGGCCGCCGTGGATCTGAGCAGCACAGGGGAGCCATCTTCGGGCCAGGAGTCTGCCGGCT
CTGCGGTGGTGGCCACTGTGGTGGTCCAGCCACCCCCACCCACACAGTCCGAAGTAGACCAGTTATCACT
TCCCCAAGAGCTAATGGCCGAGGCCCAAGCTGGCACCACCACCCTCATGGTAACGGGGCTCACCCCCGAG
GAGCTGGCAGTGACGGCTGCTGCAGAAGCAGCTGCCCAGGCCGCAGCCACGGAGGAAGCCCAGGCCCTGG
CCATCCAGGCGGTGCTCCAGGCCGCGCAGCAGGCCGTCATGGGCACCGGCGAGCCCATGGACACCTCCGA
GGCAGCAGCAACCGTGACTCAGGCGGAGCTGGGGCACCTGTCGGCCGAGGGTCAGGAGGGCCAGGCCACC
ACCATACCCATTGTGCTGACACAGCAGGAGCTGGCTGCCCTGGTGCAGCAGCAGCAGCTGCAGGAGGCCC
AGGCCCAGCAGCAGCATCACCACCTCCCCACTGAGGCCCTGGCCCCTGCCGACAGTCTCAACGACCCAGC
CATTGAGAGCAATTGCCTCAATGAGCTGGCCGGCACGGTCCCCAGCACTGTGGCGCTGCTGCCCTCAACG
GCCACTGAGAGCCTGGCTCCATCCAACACATTTGTGGCCCCCCAGCCGGTTGTGGTGGCCAGCCCAGCCA
AGCTGCAGGCTGCAGCTACCCTGACCGAAGTGGCCAATGGCATCGAGTCCCTGGGTGTGAAGCCAGACCT
GCCGCCCCCACCCAGCAAAGCCCCCATGAAGAAGGAAAACCAGTGGTTTGATGTGGGAGTCATTAAGGGC
ACCAATGTAATGGTGACACACTATTTCCTGCCACCAGATGATGCTGTCCCATCAGACGATGATTTGGGCA
CCGTCCCTGACTATAACCAGCTGAAGAAGCAGGAGCTGCAGCCAGGCACAGCCTATAAGTTTCGTGTTGC
CGGAATCAATGCCTGTGGCCGGGGGCCCTTCAGCGAAATCTCAGCCTTTAAGACGTGCCTGCCTGGTTTC
CCAGGGGCCCCTTGTGCCATTAAAATCAGCAAAAGTCCGGATGGTGCTCACCTCACCTGGGAGCCACCCT
CTGTGACCTCCGGCAAGATTATCGAGTACTCCGTGTACCTGGCCATCCAGAGCTCACAGGCTGGGGGCGA
GCTCAAGAGCTCCACCCCGGCCCAGCTGGCCTTCATGCGGGTGTACTGCGGGCCCAGCCCCTCCTGCCTG
GTGCAGTCCTCCAGCCTTTCCAACGCCCACATCGACTACACCACCAAGCCCGCCATCATCTTCCGCATCG
CCGCCCGCAATGAGAAGGGCTATGGCCCGGCCACACAAGTGAGGTGGCTGCAGGAAACCAGTAAAGACAG
CTCTGGCACCAAGCCAGCCAACAAGCGGCCCATGTCCTCTCCAGAAATGAAATCTGCTCCAAAGAAATCT
AAGGCCGATGGTCAGTGA

Translation (2035 aa):
MASAVSPANLPAVLLQPRWKRVVGWSGPVPRPRHGHRAVAIKELIVVFGGGNEGIVDELHVYNTATNQWF
IPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWEWKRLKAKTPKNGPPPCPRLGH
SFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVVYTE
KDNKKSKLVIYGGMSGCRLGDLWTLDIDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDD
VKVATHEKEWKCTNTLACLNLDTMAWETILMDTLEDNIPRARAGHCAVAINTRLYIWSGRDGYRKAWNNQ
VCCKDLWYLETEKPPPPARVQLVRANTNSLEVSWGAVATADSYLLQLQKYDIPATAATATSPTPNPVPSV
PANPPKSPAPAAAAPAVQPLTQVGITLLPQAAPAPPTTTTIQVLPTVPGSSISVPTAARTQGVPAVLKVT
GPQATTGTPLVTMRPASQAGKAPVTVTSLPAGVRMVVPTQSAQGTVIGSSPQMSGMAALAAAAAATQKIP
PSSAPTVLSVPAGTTIVKTMAVTPGTTTLPATVKVASSPVMVSNPATRMLKTAAAQVGTSVSSATNTSTR
PIITVHKSGTVTVAQQAQVVTTVVGGVTKTITLVKSPISVPGGSALISNLGKVMSVVQTKPVQTSAVTGQ
ASTGPVTQIIQTKGPLPAGTILKLVTSADGKPTTIITTTQASGAGTKPTILGISSVSPSTTKPGTTTIIK
TIPMSAIITQAGATGVTSSPGIKSPITIITTKVMTSGTGAPAKIITAVPKIATGHGQQGVTQVVLKGAPG
QPGTILRTVPMGGVRLVTPVTVSAVKPAVTTLVVKGTTGVTTLGTVTGTVSTSLAGAGGHSTSASLATPI
TTLGTIATLSSQVINPTAITVSAAQTTLTAAGGLTTPTITMQPVSQPTQVTLITAPSGVEAQPVHDLPVS
ILASPTTEQPTATVTIADSGQGDVQPGTVTLVCSNPPCETHETGTTNTATTTVVANLGGHPQPTQVQFVC
DRQEAAASLVTSTVGQQNGSVVRVCSNPPCETHETGTTNTATTATSNMAGQHGCSNPPCETHETGTTNTA
TTAMSSVGANHQRDARRACAAGTPAVIRISVATGALEAAQGSKSQCQTRQTSATSTTMTVMATGAPCSAG
PLLGPSMAREPGGRSPAFVQLAPLSSKVRLSSPSIKDLPAGRHSHAVSTAAMTRSSVGAGEPRMAPVCES
LQGGSPSTTVTVTALEALLCPSATVTQVCSNPPCETHETGTTNTATTSNAGSAQRVCSNPPCETHETGTT
HTATTATSNGGTGQPEGGQQPPAGRPCETHQTTSTGTTMSVSVGALLPDATSSHRTVESGLEVAAAPSVT
PQAGTALLAPFPTQRVCSNPPCETHETGTTHTATTVTSNMSSNQDPPPAASDQGEVESTQGDSVNITSSS
AITTTVSSTLTRAVTTVTQSTPVPGPSVPPPEELQVSPGPRQQLPPRQLLQSASTALMGESAEVLSASQT
PELPAAVDLSSTGEPSSGQESAGSAVVATVVVQPPPPTQSEVDQLSLPQELMAEAQAGTTTLMVTGLTPE
ELAVTAAAEAAAQAAATEEAQALAIQAVLQAAQQAVMGTGEPMDTSEAAATVTQAELGHLSAEGQEGQAT
TIPIVLTQQELAALVQQQQLQEAQAQQQHHHLPTEALAPADSLNDPAIESNCLNELAGTVPSTVALLPST
ATESLAPSNTFVAPQPVVVASPAKLQAAATLTEVANGIESLGVKPDLPPPPSKAPMKKENQWFDVGVIKG
TNVMVTHYFLPPDDAVPSDDDLGTVPDYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGF
PGAPCAIKISKSPDGAHLTWEPPSVTSGKIIEYSVYLAIQSSQAGGELKSSTPAQLAFMRVYCGPSPSCL
VQSSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQVRWLQETSKDSSGTKPANKRPMSSPEMKSAPKKS
KADGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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