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Report for CCDS41621.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41621.1 Public Homo sapiens 11 INSC 24 110 108 CCDS HistoryNCBI Gene:387755Re-query CCDS DB by CCDS ID:41621.1Re-query CCDS DB by GeneID:387755See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41621.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379554.7 ENSP00000368872.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379554.7Link to Ensembl Protein Viewer:ENSP00000368872.3Re-query CCDS DB by Nucleotide ID:ENST00000379554Re-query CCDS DB by Protein ID:ENSP00000368872
Original member Current member NCBI NM_001031853.5 NP_001027024.3 Accepted alive Link to Nucleotide Sequence:NM_001031853.5Link to Protein Sequence:NP_001027024.3Re-query CCDS DB by Nucleotide ID:NM_001031853Re-query CCDS DB by Protein ID:NP_001027024Link to BLAST:NP_001027024.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001027024.3 579 Q1MX18-1 579 100% 0 0

Chromosomal Locations for CCDS 41621.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 15112470 15112565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 15149130 15149230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 15175741 15176086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 15177111 15177163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 15178324 15178447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 15190701 15190814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 15200824 15200949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 15221477 15221648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 15225650 15225828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 15235602 15235668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 15238919 15239074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 15240447 15240523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 15245912 15246040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1740 nt):
ATGAGACGGCCCCCTGGCAATGGAGAGGCGGCCAGCGAAGGTCCAGGTGGCTGGGGTCTATGGGGAGTCC
AGGAGTCCAGGAGGCTGTGCTGTGCCGGTCACGACCGCTGCAAGCAGGCTTTGCTGCAGATTGGGATCAA
CATGATGGCACTGCCTGGAGGTCGCCACCTGGACTCCGTCACCCTGCCGGGTCAGCGGCTACACCTGATG
CAGGTGGACTCAGTCCAGCGCTGGATGGAAGATCTGAAGCTCATGACCGAGTGCGAGTGCATGTGTGTCC
TGCAGGCCAAGCCCATCAGCCTGGAAGAGGATGCACAGGGTGACCTCATCCTGGCAGGTGGCCCTGGCCC
TGGAGACCCCCTGCAGCTGCTGCTCAAACGGGGTTGGGTCATTAGCACAGAGCTGCGCAGGATCGGGCAG
AAGCTGGCCCAGGACCGCTGGGCACGGGTGCACAGCATGAGCGTGCGTCTGACCTGCCATGCCCGCTCCA
TGGTCAGCGAGTACAGTGCTGTCAGCAGGAACTCCTTGAAGGAAATGGGCGAGATTGAGAAGCTGCTAAT
GGAGAAATGCTCGGAGCTCTCGGCAGTCACAGAGAGGTGCCTTCAGGTTGAGAATGAGCATGTCCTGAAG
TCAATGAAGGCCTGCGTGAGTGAGACCCTGAGCATGCTGGGCCAGCACTTTGGTCAGCTGCTGGAGCTGG
CCCTGACACGGGAGGTTCAGGCACTGGTGAGAAAAATTGATGCCTCAGACAATATCTACACCACAGAGTC
CACCACAGGGAACCTGTTCAGCCTGACCCAGGAGGGGGCTCCCTTGTGCCGCATCATAGCCAAGGAGGGT
GGGGTCGTAGCACTCTTCAAGGTTTGCCGGCAGGACAGTTTCCGGTGCTTGTACCCCCAGGCGCTCCGCA
CGCTGGCCTCCATCTGCTGCGTGGAAGAGGGTGTCCACCAGCTGGAGAAGGTGGATGGCGTTCTGTGCTT
GGCCGACATCCTGACCGACAACAGCCACTCAGAGGCCACACGGGCTGAGGCTGCGGCTGTGGTGGCCCAG
GTCACCTCCCCACACCTGCCCGTCACCCAGCACCTCAGTAGCTTCCTGGAGAGCATGGAGGAGATCGTGA
CAGCCCTCGTCAAACTGTGCCAAGAGGCCTCATCAGGGGAAGTCTTCCTACTGGCCTCTGCGGCCCTTGC
CAACATCACGTTCTTTGACACAATGGCCTGCGAGATGCTCCTGCAGTTGAATGCCATCCGTGTTCTCCTG
GAAGCCTGCAGTGACAAGCAGAGAGTGGACACGCCTTACACTCGGGACCAGATTGTGACCATCTTGGCAA
ACATGTCTGTCCTAGAACAGTGTGCCTCTGACATCATTCAGGAAAATGGGGTCCAGCTTATCATGGGCAT
GCTGTCTGAAAAACCAAGGTCTGGGACTCCTGCTGAAGTGGCAGCCTGTGAGCGAGTCCAGCAGAAAGCT
GCAGTGACCCTGGCTCGTCTCAGCCGAGACCCAGATGTGGCACGGGAGGCCGTGCGGCTCAGCTGCATGT
CCCGTCTCATCGAGCTCTGCAGATCCCCATCAGAGAGGAACAGCAGTGACGCCGTGCTTGTGGCCTGCCT
GGCTGCTCTGCGTAGATTGGCTGGGGTCTGCCCTGAAGGCCTCCAGGACTCTGACTTTCAGCAGTTGGTC
CAGCCTCGGCTGGTGGACTCCTTCTTACTCTGCAGCAACATGGAGGAGAGTTTTGTGTAG

Translation (579 aa):
MRRPPGNGEAASEGPGGWGLWGVQESRRLCCAGHDRCKQALLQIGINMMALPGGRHLDSVTLPGQRLHLM
QVDSVQRWMEDLKLMTECECMCVLQAKPISLEEDAQGDLILAGGPGPGDPLQLLLKRGWVISTELRRIGQ
KLAQDRWARVHSMSVRLTCHARSMVSEYSAVSRNSLKEMGEIEKLLMEKCSELSAVTERCLQVENEHVLK
SMKACVSETLSMLGQHFGQLLELALTREVQALVRKIDASDNIYTTESTTGNLFSLTQEGAPLCRIIAKEG
GVVALFKVCRQDSFRCLYPQALRTLASICCVEEGVHQLEKVDGVLCLADILTDNSHSEATRAEAAAVVAQ
VTSPHLPVTQHLSSFLESMEEIVTALVKLCQEASSGEVFLLASAALANITFFDTMACEMLLQLNAIRVLL
EACSDKQRVDTPYTRDQIVTILANMSVLEQCASDIIQENGVQLIMGMLSEKPRSGTPAEVAACERVQQKA
AVTLARLSRDPDVAREAVRLSCMSRLIELCRSPSERNSSDAVLVACLAALRRLAGVCPEGLQDSDFQQLV
QPRLVDSFLLCSNMEESFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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