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Report for CCDS17815.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17815.1 Public Mus musculus 3 Usp53 23 108 98 CCDS HistoryNCBI Gene:99526Re-query CCDS DB by CCDS ID:17815.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17815.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090379.6 ENSMUSP00000087857.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090379.6Link to Ensembl Protein Viewer:ENSMUSP00000087857.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000090379Re-query CCDS DB by Protein ID:ENSMUSP00000087857
Original member NCBI NM_133857.3 NP_598618.1 Updated not alive Link to Nucleotide Sequence:NM_133857.3Link to Protein Sequence:NP_598618.1Re-query CCDS DB by Nucleotide ID:NM_133857Re-query CCDS DB by Protein ID:NP_598618
Current member NCBI NM_133857.4 NP_598618.1 Accepted alive Link to Nucleotide Sequence:NM_133857.4Link to Protein Sequence:NP_598618.1Re-query CCDS DB by Nucleotide ID:NM_133857Re-query CCDS DB by Protein ID:NP_598618Link to BLAST:NP_598618.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598618.1 1069 P15975-1 1069 100% 0 0

Chromosomal Locations for CCDS 17815.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 122933722 122934595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122935988 122936084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122947361 122947437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122949124 122949856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122951171 122951314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122952557 122952706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122953180 122953342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122956699 122956848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122957585 122957731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122959032 122959137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122961155 122961237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122961319 122961432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122962884 122963018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122964255 122964347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122968589 122968732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3210 nt):
ATGGCCTGGGTAAAATTTTTACGGAAGCCTAGCGGCAATCTTGGCAAAGCTTATCAAGCTGGAAGCCTGC
TGTCCCTAGCCCCTACTGTGGGCTTGTTAAACGAGCCAGGGCAGAACAGCTGCTTTCTAAACAGTGCTGT
ACAGGTTTTATGGCAATTAGATATATTCCGAAGAAGCTTGAGAGCTCTGACTGGACACATATGTCAGGGA
GATGCCTGTATATTTTGTGCATTGAAGACAATATTTGCACAATTTCAACACAGTCGAGAAAAAGCACTTC
CCTCAGATAACATAAGGCATGCTCTTGCAGAAAGCTTCAAAGATGAGCAGAGATTTCAGCTTGGCCTCAT
GGATGATGCTGCCGAGTGCTTTGAAAATATATTGGCAAGAATTCATTTTCACCTGGTGCCAAACAGGGAC
GCAGACATGTGCACCTCTAAGTCTTGTGTGACTCATCAGAAGTTTGCCATGACTCTGTATGAGCAGTGTG
TGTGCCGGAGCTGTGGCGCTTCCTCAGACCCTCTGCCCTTTACCGAACTCGTGAGGTACATTTCTACAAC
AGCCCTGTGCAATGAAGTTGAAAGAATGATGGAAAGGCATGAGCGAGTTAAACCAGAGATGTTTGCGGAA
CTGTTGCAAGCTGCAAACACAGCAGATGACTATCGGAAGTGTCCTAGTAACTGTGGCCAAAAAATAAAAA
TCCGCCGTGTTTTAATGAATTGCCCAGAGATTGTTACAATTGGATTAGTGTGGGACTCCGAGCACTCAGA
CTTGACTGAAGATGTTGTTCGAAGTCTAGCCACGCATCTCTACCTTCCTGGGCTTTTTTATAGGGTCACT
GATGAGAATGCCACAGACAGCGAGCTGCACCTTGTGGGTATGATCTGTTACACCAGCCGACACTACTGTG
CCTTTGCTTTTCACACCAAGAGCTCCAAGTGGGTGTTTTTTGATGATGCACACGTGAAGGAGATGGGAAC
CAGATGGAAAGATGTGGTCTCCAAGTGCATACGATGCCACTTACAGCCCCTTTTGCTGTTTTATGCAAAC
CCGGATGGTACAGCGGTCTCTACTGAGGATGCACTCAGGCAGGTTGTCCACTGGTCACATTACAGATCGG
GTGAAGAAAACATGGGATGTGGAAAGCCTATCATTTATAAACCAGATAATTCAAAGGAAAATGGATTTGG
TGGTCAGACGAAACAGAAAGAAAATCACAAATTTCAAACTGATATTTCCTCACTTAATCGGAGCCAAATG
CAGACAAGTGGGAGGAGAGCACCAGTTAAGTTAAGCCATGATCAAAGAGAAAAGATAAAAGACATTTCCA
GAGAATGTGCTCTGAAAGCCATTGAACAGAAAAATGCACTTTCTTCTCAACGGAAAGATTTAGAAAAGGG
ACAGAGGAAAGATACAGGCCGACACAGGGATTTGGTTGATGAAGTCTTGGCATCTTTCAAGTCCGGATCA
CCTCCTGCCTCGGATGGCTTTAGACAGCAAGGGAATCCCCATCTCTACCACAGCCAAGGCAAAGGACCTT
GTAAACATGACCGAGCCACCCATGAGAGCTACACCTCTGGAAAAGTGATAAGTTCAAGCAAATCCCAGAA
TCTTCTTGTTCCTGGAGAGAAAACAACCGGCAAAGCTAAGAGTGACAGTGGCACTGGATATGAAACAGAC
AGCAGCCAAGATTCAAGGGACAAAGGAGGCAGCTACAGTAGTAAGACTAAAAGCCGCCACCGTGGCTGGA
AACCCATGAGAGAAACCCTAAACGTCGATAGCGTTTTTAGTGAGAGCGAGAAGAGGCAGCACAGTCCGAG
GCGGAAGTCGGATATCGGTAGCAGGCCTAGGTGTAGCAAGGACCAGAGTTTTAATAACTGGCCAAAGGCA
AACCCAAAGCAAAAAGGCTTAATGACCATATACGAAGATGAAATGAAGCAAGAGGCAGGAAGCAGAAGTT
CCCTTGAAACTAATGGAAAAGGAGCAGAGAAAAATCTAAGTGCTGCAGAGAGCAGAGGTCCTGGTACCAG
CTGGCAGATGCAAAGGACAGAGTCTGGGTATGAGAGCAGCGATCATGTCAGTAACGGATCTGCCAGCTTG
GACTCTCCTGGTGTGGAGGGAAGTGGGGCAGTCATGGATGTCGGTGGTGGGAAAGCCTTCAGTGAACATA
TTAAGATGAACAGCCATAATATGGACAGTATGGAGTATATATCTCATCATTGCAAAGACCACCCAGAAGG
CTTTAGGAAAGAACTCCAGGACTTGGAAGCAGATGATAAAATTCATGAGCTCCACCCAGAATCACATGTG
CAAATAAAAAGCCATTTGATAAAAAGGTCACAGATTGGTGAAACCAATGACAAGTTGTTTCCTTCAGCCA
GCCCACAAACACTTGCAAGAGAGCATGTTTACCAGACAAATGAACACAAAGTAGAAAGACCAGATAGGAG
CAAATGTTCAGAGAGGCATAATACAGAAAACTCTGAGGGAACAGGCTTGCCATTTCACGTTGATGAGAGT
TCTGTGGCTGGGAAGAGAGTCGACAGTAACGAAACAGTCTCGCCATCTTCACTGCCTTCATCTGTGAGAA
CTGCTGGGCTAAAGCCCGAAACTGGACCCCTCATGTTTTGGTCACAGCAAAATATCACAGAACAGGGTTA
CTCTGACAACTCTCTGTCCAGAGAACTTACACTTCTGTCTGCCTGCAATGCTGATAGTTGTCAGATGCCA
AAACTCCACTGCCACCGTTCACCACCCCCTTTGCCACCAAAGAAATACTCTACAGCCAGTGCACCAAGGT
TAGAGAGAGTTGGACTTAGCCCTGATGTCGGGGTTACCGAGGCGTTTAACACTAATCCCTCCAGCCTTCC
AAAACACAGCTTGAGTCCAGCCTCAGGACCAAGTTTAGAAGGGAGTCCATGCATGACCCAGGAAAGAGAT
AAAGAAACTATTCAAGTGAAGCAACTTGCTGCCAACAGCTACCCGTCCAGTTGTTCAACTAACAGTTTTC
AGCCAGATCAAGACTCTACTTCTGTGTGTCCAAATGAAACAATTTCATTAACTACCTATTTCTCAGTTGA
TAGTTGCATGACTGATACCTACAGATTGAAATACCATCAAAGACCTAAGCTCTATTTTCCAGAGAGCAGT
GGCCATCATAGTAATAATTCACTCTCTCAAACTGAGCAAGTAGAGGGATCCATTACATAA

Translation (1069 aa):
MAWVKFLRKPSGNLGKAYQAGSLLSLAPTVGLLNEPGQNSCFLNSAVQVLWQLDIFRRSLRALTGHICQG
DACIFCALKTIFAQFQHSREKALPSDNIRHALAESFKDEQRFQLGLMDDAAECFENILARIHFHLVPNRD
ADMCTSKSCVTHQKFAMTLYEQCVCRSCGASSDPLPFTELVRYISTTALCNEVERMMERHERVKPEMFAE
LLQAANTADDYRKCPSNCGQKIKIRRVLMNCPEIVTIGLVWDSEHSDLTEDVVRSLATHLYLPGLFYRVT
DENATDSELHLVGMICYTSRHYCAFAFHTKSSKWVFFDDAHVKEMGTRWKDVVSKCIRCHLQPLLLFYAN
PDGTAVSTEDALRQVVHWSHYRSGEENMGCGKPIIYKPDNSKENGFGGQTKQKENHKFQTDISSLNRSQM
QTSGRRAPVKLSHDQREKIKDISRECALKAIEQKNALSSQRKDLEKGQRKDTGRHRDLVDEVLASFKSGS
PPASDGFRQQGNPHLYHSQGKGPCKHDRATHESYTSGKVISSSKSQNLLVPGEKTTGKAKSDSGTGYETD
SSQDSRDKGGSYSSKTKSRHRGWKPMRETLNVDSVFSESEKRQHSPRRKSDIGSRPRCSKDQSFNNWPKA
NPKQKGLMTIYEDEMKQEAGSRSSLETNGKGAEKNLSAAESRGPGTSWQMQRTESGYESSDHVSNGSASL
DSPGVEGSGAVMDVGGGKAFSEHIKMNSHNMDSMEYISHHCKDHPEGFRKELQDLEADDKIHELHPESHV
QIKSHLIKRSQIGETNDKLFPSASPQTLAREHVYQTNEHKVERPDRSKCSERHNTENSEGTGLPFHVDES
SVAGKRVDSNETVSPSSLPSSVRTAGLKPETGPLMFWSQQNITEQGYSDNSLSRELTLLSACNADSCQMP
KLHCHRSPPPLPPKKYSTASAPRLERVGLSPDVGVTEAFNTNPSSLPKHSLSPASGPSLEGSPCMTQERD
KETIQVKQLAANSYPSSCSTNSFQPDQDSTSVCPNETISLTTYFSVDSCMTDTYRLKYHQRPKLYFPESS
GHHSNNSLSQTEQVEGSIT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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