NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS10046.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10046.1 Public Homo sapiens 15 TMCO5A 24 110 108 CCDS HistoryNCBI Gene:145942Re-query CCDS DB by CCDS ID:10046.1Re-query CCDS DB by GeneID:145942See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10046.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319669.5 ENSP00000327234.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000319669.5Link to Ensembl Protein Viewer:ENSP00000327234.4Re-query CCDS DB by Nucleotide ID:ENST00000319669Re-query CCDS DB by Protein ID:ENSP00000327234
Original member Current member NCBI NM_001370735.1 NP_001357664.1 Accepted alive Link to Nucleotide Sequence:NM_001370735.1Link to Protein Sequence:NP_001357664.1Re-query CCDS DB by Nucleotide ID:NM_001370735Re-query CCDS DB by Protein ID:NP_001357664Link to BLAST:NP_001357664.1
Original member Current member NCBI NM_152453.4 NP_689666.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152453.4Link to Protein Sequence:NP_689666.2Re-query CCDS DB by Nucleotide ID:NM_152453Re-query CCDS DB by Protein ID:NP_689666Link to BLAST:NP_689666.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357664.1 288 Q8N6Q1-1 288 100% 0 0
NP_689666.2 288 Q8N6Q1-1 288 100% 0 0

Chromosomal Locations for CCDS 10046.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 37936324 37936463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37936847 37936970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37937346 37937396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37938158 37938229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37941149 37941205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37941671 37941730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37942191 37942255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37943341 37943398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37947656 37947696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37951036 37951234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGGAAATCTCAAGATTGGCTCAGTCAAAAAGAAACATTATCAGTTTGAACATGGACCTTGAAAGGGATA
CGCAGAGAATAGATGAAGCAAATCAGAAACTTCTTCTCAAAATCCAAGAGAGGGAAGATAAGATTCAGAG
GCTGGAAAGTGAGATCATTCAGACGCGGGGCCTGGTGGAAGATGAAGAGTGGGAGAAGGAGAACCGCACC
ACGATGGAAAGGGAAAGAGCCTTGCAGGAGCTGGAGGAAGAAACAGCCAGACTTGAAAGGAAGAATAAGA
CGTTGGTCCACAGTATAACAGAACTTCAACAAAAGCTTACAAGGAAATCACAAAAGATAACCAATTGTGA
ACAAAGCAGTCCAGATGGAGCCCTAGAAGAGACAAAGGTTAAGTTACAACAGCTGGAAGCTTCCTATGCA
TGCCAAGAGAAGGAGCTGCTCAAGGTAATGAAGGAGTATGCATTTGTGACCCAGCTCTGTGAAGATCAAG
CCCTCTACATAAAGAAGTACCAGGAAACGTTGAAGAAAATAGAAGAAGAACTAGAGGCTCTGTTCCTTGA
GAGAGAAGTATCAAAACTCGTGAGCATGAACCCTGTGGAAAAAGAGCATACCAGCCAAAATAATGAGGGT
ACTCCTACCCAAAAGACAGCAAGATTATTCAGTAAAAAGATTTTTTGCTGTCTCTTTTTCATCACCCTAT
TTTTCATCAGACTGCTGAGCTACATGTTTTTTCATGTAAGATTCATAAATCCAGATCTCCTCGTCAATGT
ACTGCCCAAGGTACTGGGCAGGAGCACCTTGTGGAAGCTCAGATGCTTCTTCTTTCCATCTCTCACACTT
GAGACAGAGGACATGTTACCCCACTGA

Translation (288 aa):
MEISRLAQSKRNIISLNMDLERDTQRIDEANQKLLLKIQEREDKIQRLESEIIQTRGLVEDEEWEKENRT
TMERERALQELEEETARLERKNKTLVHSITELQQKLTRKSQKITNCEQSSPDGALEETKVKLQQLEASYA
CQEKELLKVMKEYAFVTQLCEDQALYIKKYQETLKKIEEELEALFLEREVSKLVSMNPVEKEHTSQNNEG
TPTQKTARLFSKKIFCCLFFITLFFIRLLSYMFFHVRFINPDLLVNVLPKVLGRSTLWKLRCFFFPSLTL
ETEDMLPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH