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Report for CCDS10240.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10240.1 Public Homo sapiens 15 SENP8 24 110 108 CCDS HistoryNCBI Gene:123228Re-query CCDS DB by CCDS ID:10240.1Re-query CCDS DB by GeneID:123228See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 10240.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340912.6 ENSP00000340505.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000340912.6Link to Ensembl Protein Viewer:ENSP00000340505.4Re-query CCDS DB by Nucleotide ID:ENST00000340912Re-query CCDS DB by Protein ID:ENSP00000340505
Original member Current member EBI ENST00000542035.2 ENSP00000446057.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542035.2Link to Ensembl Protein Viewer:ENSP00000446057.2Re-query CCDS DB by Nucleotide ID:ENST00000542035Re-query CCDS DB by Protein ID:ENSP00000446057
Original member Current member NCBI NM_001166340.2 NP_001159812.1 Accepted alive Link to Nucleotide Sequence:NM_001166340.2Link to Protein Sequence:NP_001159812.1Re-query CCDS DB by Nucleotide ID:NM_001166340Re-query CCDS DB by Protein ID:NP_001159812Link to BLAST:NP_001159812.1
Original member Current member NCBI NM_001172109.1 NP_001165580.1 Accepted alive Link to Nucleotide Sequence:NM_001172109.1Link to Protein Sequence:NP_001165580.1Re-query CCDS DB by Nucleotide ID:NM_001172109Re-query CCDS DB by Protein ID:NP_001165580Link to BLAST:NP_001165580.1
Original member Current member NCBI NM_001172110.1 NP_001165581.1 Accepted alive Link to Nucleotide Sequence:NM_001172110.1Link to Protein Sequence:NP_001165581.1Re-query CCDS DB by Nucleotide ID:NM_001172110Re-query CCDS DB by Protein ID:NP_001165581Link to BLAST:NP_001165581.1
Original member Current member NCBI NM_001172111.2 NP_001165582.1 Accepted alive Link to Nucleotide Sequence:NM_001172111.2Link to Protein Sequence:NP_001165582.1Re-query CCDS DB by Nucleotide ID:NM_001172111Re-query CCDS DB by Protein ID:NP_001165582Link to BLAST:NP_001165582.1
Original member Current member NCBI NM_145204.4 NP_660205.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145204.4Link to Protein Sequence:NP_660205.3Re-query CCDS DB by Nucleotide ID:NM_145204Re-query CCDS DB by Protein ID:NP_660205Link to BLAST:NP_660205.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159812.1 212 Q96LD8 212 100% 0 0
NP_001165580.1 212 Q96LD8 212 100% 0 0
NP_001165581.1 212 Q96LD8 212 100% 0 0
NP_001165582.1 212 Q96LD8 212 100% 0 0
NP_660205.3 212 Q96LD8 212 100% 0 0

Chromosomal Locations for CCDS 10240.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 72139624 72140262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGGACCCCGTAGTCTTGAGTTACATGGACAGTCTACTGCGGCAATCAGATGTCTCACTATTGGATCCGC
CAAGCTGGCTCAATGACCATATTATTGGGTTTGCGTTTGAGTACTTTGCCAACAGTCAGTTTCATGACTG
CTCTGATCACGTCAGTTTCATCAGCCCTGAAGTCACCCAGTTCATCAAGTGCACTAGCAACCCAGCAGAG
ATTGCCATGTTCCTTGAACCACTGGACCTCCCCAACAAGAGAGTTGTATTTTTAGCCATCAATGATAACT
CCAACCAGGCAGCTGGAGGAACCCACTGGAGTTTATTGGTCTACCTCCAAGATAAAAATAGCTTTTTTCA
TTATGATTCCCATAGCAGGAGCAACTCAGTTCACGCAAAGCAGGTAGCAGAGAAACTGGAGGCTTTCTTA
GGCAGAAAAGGAGACAAACTGGCCTTTGTGGAAGAGAAAGCCCCTGCCCAACAAAACAGCTATGACTGTG
GGATGTACGTGATATGTAACACTGAGGCCTTGTGTCAGAACTTCTTTAGGCAACAGACAGAATCACTGCT
GCAGCTACTCACCCCTGCATACATCACAAAGAAGAGGGGAGAATGGAAAGATCTCATTACCACACTTGCT
AAAAAGTAG

Translation (212 aa):
MDPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVSFISPEVTQFIKCTSNPAE
IAMFLEPLDLPNKRVVFLAINDNSNQAAGGTHWSLLVYLQDKNSFFHYDSHSRSNSVHAKQVAEKLEAFL
GRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTESLLQLLTPAYITKKRGEWKDLITTLA
KK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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