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Report for CCDS10267.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10267.1 Public Homo sapiens 15 EDC3 24 110 108 CCDS HistoryNCBI Gene:80153Re-query CCDS DB by CCDS ID:10267.1Re-query CCDS DB by GeneID:80153See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10267.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000315127.9 ENSP00000320503.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000315127.9Link to Ensembl Protein Viewer:ENSP00000320503.4Re-query CCDS DB by Nucleotide ID:ENST00000315127Re-query CCDS DB by Protein ID:ENSP00000320503
Original member Current member EBI ENST00000426797.7 ENSP00000401343.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000426797.7Link to Ensembl Protein Viewer:ENSP00000401343.3Re-query CCDS DB by Nucleotide ID:ENST00000426797Re-query CCDS DB by Protein ID:ENSP00000401343
Original member Current member EBI ENST00000568176.5 ENSP00000455580.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000568176.5Link to Ensembl Protein Viewer:ENSP00000455580.1Re-query CCDS DB by Nucleotide ID:ENST00000568176Re-query CCDS DB by Protein ID:ENSP00000455580
Original member Current member EBI ENST00000647659.1 ENSP00000497737.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000647659.1Link to Ensembl Protein Viewer:ENSP00000497737.1Re-query CCDS DB by Nucleotide ID:ENST00000647659Re-query CCDS DB by Protein ID:ENSP00000497737
Original member Current member NCBI NM_001142443.3 NP_001135915.1 Accepted alive Link to Nucleotide Sequence:NM_001142443.3Link to Protein Sequence:NP_001135915.1Re-query CCDS DB by Nucleotide ID:NM_001142443Re-query CCDS DB by Protein ID:NP_001135915Link to BLAST:NP_001135915.1
Original member Current member NCBI NM_001142444.3 NP_001135916.1 Accepted alive Link to Nucleotide Sequence:NM_001142444.3Link to Protein Sequence:NP_001135916.1Re-query CCDS DB by Nucleotide ID:NM_001142444Re-query CCDS DB by Protein ID:NP_001135916Link to BLAST:NP_001135916.1
Original member Current member NCBI NM_001351378.2 NP_001338307.1 Accepted alive Link to Nucleotide Sequence:NM_001351378.2Link to Protein Sequence:NP_001338307.1Re-query CCDS DB by Nucleotide ID:NM_001351378Re-query CCDS DB by Protein ID:NP_001338307Link to BLAST:NP_001338307.1
Original member Current member NCBI NM_025083.5 NP_079359.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025083.5Link to Protein Sequence:NP_079359.2Re-query CCDS DB by Nucleotide ID:NM_025083Re-query CCDS DB by Protein ID:NP_079359Link to BLAST:NP_079359.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135915.1 508 Q96F86 508 100% 0 0
NP_001135916.1 508 Q96F86 508 100% 0 0
NP_001338307.1 508 Q96F86 508 100% 0 0
NP_079359.2 508 Q96F86 508 100% 0 0

Chromosomal Locations for CCDS 10267.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 74632612 74632946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74635409 74635626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74640466 74640619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74655733 74656068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74671455 74671774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74674961 74675124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1527 nt):
ATGGCTACAGATTGGCTGGGAAGTATTGTGTCCATCAATTGTGGAGATAGCTTGGGTGTCTATCAGGGAA
GAGTGTCAGCTGTGGATCAGGTCAGCCAGACCATTTCTCTCACCCGGCCTTTCCATAATGGAGTGAAGTG
TCTTGTTCCAGAAGTCACCTTCAGGGCAGGTGACATTACGGAGTTAAAAATTCTGGAGATACCAGGACCT
GGAGACAACCAACATTTTGGAGACCTTCATCAAACAGAATTAGGCCCCTCTGGTGCTGGCTGCCAAGTGG
GCATCAATCAGAATGGCACAGGCAAGTTTGTCAAGAAGCCAGCCTCTTCCAGCAGTGCCCCTCAGAATAT
CCCTAAGAGGACAGATGTGAAGAGCCAGGATGTTGCCGTTTCCCCGCAGCAGCAACAGTGCTCAAAGAGC
TATGTCGACAGGCACATGGAATCCTTGAGTCAGTCCAAAAGTTTCCGTCGTCGGCACAACTCCTGGTCAT
CTAGTAGCAGGCACCCAAATCAGGCAACTCCCAAGAAAAGTGGTTTAAAGAATGGCCAGATGAAGAATAA
AGATGACGAGTGCTTCGGGGATGATATTGAGGAGATCCCAGACACAGATTTTGATTTTGAAGGGAACCTG
GCTCTTTTTGACAAGGCAGCTGTGTTTGAGGAGATTGATACCTATGAAAGGAGAAGTGGTACCCGTTCCC
GGGGCATCCCAAATGAAAGGCCCACTCGGTACCGCCATGATGAGAACATCTTGGAGTCCGAGCCCATTGT
CTATCGACGGATCATAGTGCCCCACAACGTGAGCAAGGAGTTCTGCACGGACTCTGGCCTGGTTGTCCCA
AGTATTTCCTATGAGCTGCATAAAAAGCTGTTGTCCGTGGCTGAGAAGCATGGGCTGACCCTTGAGCGGA
GACTGGAGATGACAGGTGTGTGTGCCAGTCAGATGGCACTGACCCTCCTCGGAGGACCTAACAGGTTGAA
TCCCAAAAATGTTCACCAGAGGCCTACAGTGGCTCTACTGTGTGGACCTCATGTGAAGGGGGCTCAGGGT
ATCAGCTGTGGAAGGCACCTAGCCAACCATGATGTCCAGGTCATCCTTTTCCTGCCCAATTTTGTCAAGA
TGTTGGAATCTATCACCAATGAGCTGTCGCTCTTCAGCAAGACCCAAGGCCAACAAGTGTCTAGCCTCAA
AGATCTGCCCACTAGCCCTGTGGACCTGGTCATCAACTGCCTGGATTGCCCTGAGAACGTCTTCCTGCGC
GATCAACCCTGGTACAAGGCAGCTGTGGCCTGGGCCAACCAGAACCGGGCACCAGTACTCAGCATAGACC
CTCCTGTGCATGAAGTCGAACAGGGCATTGATGCCAAATGGTCACTGGCACTGGGCCTGCCTCTGCCACT
GGGGGAGCACGCAGGCCGTATCTATTTGTGCGACATTGGCATTCCCCAGCAGGTCTTCCAGGAGGTGGGC
ATCAACTACCACTCGCCCTTTGGCTGCAAGTTTGTTATCCCACTGCACTCTGCTTAG

Translation (508 aa):
MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDITELKILEIPGP
GDNQHFGDLHQTELGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNIPKRTDVKSQDVAVSPQQQQCSKS
YVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLKNGQMKNKDDECFGDDIEEIPDTDFDFEGNL
ALFDKAAVFEEIDTYERRSGTRSRGIPNERPTRYRHDENILESEPIVYRRIIVPHNVSKEFCTDSGLVVP
SISYELHKKLLSVAEKHGLTLERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQG
ISCGRHLANHDVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLR
DQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRIYLCDIGIPQQVFQEVG
INYHSPFGCKFVIPLHSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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