CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS10333.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
10333.2 |
Public |
Homo sapiens |
15 |
ALPK3 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:57538](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:10333.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:57538](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 15 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 10333.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000258888.6 |
ENSP00000258888.6 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000258888.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000258888.6](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000258888](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000258888](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_020778.5 |
NP_065829.4 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_020778.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_065829.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_020778](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_065829](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_065829.4](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_065829.4 |
1705 |
Q96L96 |
1705 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 10333.2
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (5118 nt): ATGGGGTCGCGGAGGGCCCCCAGCCGGGGCTGGGGCGCGGGTGGGCGGTCGGGGGCGGGGGGCGACGGTG AGGACGACGGCCCCGTGTGGATCCCCAGCCCAGCCAGCCGGAGCTACCTGCTCAGCGTGCGGCCCGAGAC CAGCTTATCAAGCAACCGGTTGTCTCACCCCAGCTCTGGAAGGAGCACCTTCTGCTCCATCATTGCTCAG CTCACAGAGGAGACCCAGCCGCTATTTGAGACCACGCTCAAGTCCCGGTCTGTGTCCGAGGACAGCGACG TCAGGTTCACCTGCATCGTCACAGGATACCCAGAGCCAGAGGTGACCTGGTACAAGGATGATACGGAGCT GGACCGCTACTGTGGCTTGCCAAAATATGAGATCACTCATCAGGGCAACCGCCACACACTGCAGCTGTAC AGGTGTCGAGAAGAAGATGCCGCCATCTACCAGGCCTCTGCCCAGAACAGCAAGGGCATTGTGTCCTGCT CAGGGGTCCTGGAGGTGGGCACCATGACTGAGTACAAGATCCACCAGCGCTGGTTCGCCAAGTTGAAGCG CAAGGCTGCGGCAAAGCTGCGCGAGATCGAGCAGAGCTGGAAGCACGAGAAGGCGGTGCCTGGGGAGGTC GACACTCTGCGCAAGCTCAGCCCCGACCGCTTCCAGCGAAAGCGGCGATTGAGCGGGGCTCAAGCGCCGG GCCCCTCGGTCCCTACCAGGGAGCCTGAGGGTGGGACCCTGGCGGCTTGGCAGGAGGGAGAGACTGAGAC TGCTCAGCACTCAGGTTTGGGCCTGATCAACAGTTTTGCTTCTGGAGAAGTGACCACCAACGGGGAGGCT GCCCCCGAGAATGGAGAGGACGGAGAGCATGGCTTGCTGACATACATCTGTGACGCCATGGAGCTGGGGC CTCAGAGAGCCCTCAAAGAGGAGAGTGGGGCCAAGAAGAAAAAGAAAGATGAGGAATCCAAGCAAGGCCT GCGGAAGCCAGAGTTAGAGAAGGCAGCCCAAAGCCGCCGTTCTTCAGAAAACTGCATCCCCAGCTCAGAC GAGCCTGACTCCTGTGGGACTCAGGGGCCCGTGGGCGTGGAGCAGGTTCAGACCCAGCCCAGAGGCAGGG CTGCACGGGGGCCTGGGTCCTCTGGCACAGATAGTACCAGGAAGCCAGCCTCTGCTGTGGGCACTCCAGA CAAGGCCCAGAAGGCCCCTGGCCCAGGCCCAGGCCAGGAAGTGTATTTCTCCTTGAAGGACATGTACCTG GAGAACACCCAGGCAGTCAGGCCTCTTGGGGAAGAGGGACCCCAGACCCTGAGTGTCCGGGCGCCTGGGG AGAGTCCCAAGGGGAAGGCACCCCTCAGGGCTAGAAGCGAGGGGGTGCCTGGCGCTCCTGGCCAGCCCAC ACACTCCTTGACCCCCCAGCCGACTAGGCCTTTCAACAGAAAGAGATTTGCCCCTCCAAAGCCCAAAGGA GAGGCCACCACTGACAGCAAGCCCATTTCTTCTCTGAGTCAAGCTCCAGAATGCGGGGCCCAGAGCTTAG GAAAGGCCCCACCTCAGGCCTCTGTGCAGGTGCCGACGCCCCCTGCCCGGCGGAGACATGGCACCCGGGA CAGCACGTTGCAGGGGCAAGCAGGCCACAGGACTCCAGGAGAGGTCCTGGAATGCCAGACAACCACGGCT CCTACCATGTCGGCCAGCAGCAGCTCTGATGTAGCCTCCATTGGGGTTAGCACTTCCGGAAGTCAAGGTA TCATTGAACCCATGGATATGGAAACCCAGGAGGATGGGAGAACATCTGCTAACCAGAGAACTGGAAGCAA GAAGAATGTGCAGGCAGATGGGAAGATACAAGTGGATGGAAGGACCAGGGGAGATGGAACACAGACAGCC CAGAGGACACGTGCAGATAGGAAGACGCAGGTGGATGCTGGGACACAAGAAAGCAAGAGGCCACAGTCAG ACAGGAGTGCACAGAAGGGCATGATGACACAGGGAAGGGCAGAGACACAGCTAGAAACAACACAGGCAGG TGAGAAGATACAGGAAGACAGGAAGGCCCAGGCAGATAAGGGCACACAGGAAGACAGAAGGATGCAGGGA GAGAAGGGGATGCAGGGAGAGAAGGGGACGCAGTCAGAGGGGAGCGCGCCCACAGCCATGGAAGGTCAGT CTGAGCAAGAGGTGGCAACCAGCCTCGGCCCACCATCCAGAACCCCCAAACTCCCACCTACAGCGGGTCC TAGAGCTCCTCTGAATATTGAATGTTTTGTACAGACCCCAGAAGGGTCTTGTTTCCCAAAAAAACCTGGT TGCCTGCCCAGATCTGAGGAGGCAGTAGTAACAGCCTCCAGGAACCATGAGCAAACTGTGCTGGGTCCCC TGTCAGGGAACCTCATGCTCCCAGCACAGCCGCCCCATGAGGGGAGTGTGGAGCAGGTGGGAGGAGAGAG ATGCCGAGGGCCACAGTCATCAGGCCCAGTCGAGGCCAAGCAGGAGGACAGCCCGTTCCAGTGCCCCAAG GAGGAGCGGCCAGGGGGAGTGCCGTGTATGGATCAGGGTGGCTGTCCTCTAGCTGGCCTGAGCCAGGAGG TACCCACGATGCCTTCTCTTCCTGGAACTGGGCTGACAGCTAGCCCAAAGGCGGGGCCGTGTAGCACCCC GACTTCTCAGCACGGGAGCACAGCCACCTTCCTGCCCTCTGAGGATCAGGTCCTGATGAGTTCTGCCCCA ACACTGCACCTGGGGCTGGGGACCCCCACTCAGAGTCACCCACCAGAAACCATGGCCACCAGCAGTGAGG GGGCCTGCGCCCAGGTACCAGATGTGGAGGGGCGGACCCCAGGTCCCCGGAGCTGTGACCCTGGCCTCAT AGATTCCCTGAAGAACTACCTGCTTCTGCTGCTGAAGCTGTCCAGCACAGAGACAAGTGGAGCAGGGGGA GAGTCCCAGGTGGGGGCAGCCACCGGAGGTCTGGTGCCCTCAGCCACTCTGACACCCACTGTGGAAGTGG CTGGGCTTAGTCCCCGGACATCGAGGCGCATCCTGGAGCGTGTGGAGAACAACCACCTGGTGCAGAGTGC ACAGACCCTGCTGCTGAGCCCCTGTACCTCCCGCCGCCTCACCGGCCTCCTGGACCGTGAGGTGCAGGCT GGCCGCCAGGCCCTTGCTGCTGCCCGAGGCTCCTGGGGTCCTGGTCCCAGCTCCCTCACTGTCCCTGCCA TTGTGGTAGACGAGGAGGACCCTGGGCTGGCCTCAGAAGGAGCCAGTGAGGGTGAAGGAGAGGTTTCCCC TGAGGGGCCTGGCCTCCTGGGGGCCTCTCAGGAGAGCAGCATGGCTGGTCGACTGGGGGAGGCGGGTGGG CAGGCAGCCCCTGGACAGGGGCCCTCAGCAGAGAGCATAGCCCAGGAGCCCTCCCAAGAGGAGAAGTTCC CAGGGGAGGCTCTGACAGGTCTCCCGGCAGCTACACCTGAGGAACTGGCTCTAGGGGCCCGGAGGAAGAG ATTTCTCCCTAAGGTCAGAGCAGCAGGAGACGGGGAGGCAACCACACCTGAAGAAAGGGAGAGCCCCACG GTTTCCCCCCGGGGGCCCAGGAAAAGCCTGGTGCCTGGGTCCCCAGGGACTCCAGGGCGGGAGAGACGCT CCCCTACGCAGGGCAGAAAGGCGAGCATGCTGGAGGTGCCTCGGGCAGAGGAGGAGCTGGCGGCAGGAGA CCTGGGCCCCAGCCCCAAGGCCGGCGGTCTGGACACAGAGGTGGCCCTGGATGAAGGCAAGCAGGAGACA CTGGCCAAGCCCAGGAAAGCCAAAGACCTGCTGAAAGCCCCACAGGTGATCCGGAAGATTCGGGTGGAGC AGTTTCCTGATGCCTCCGGTAGCCTGAAGCTGTGGTGCCAGTTTTTCAACATTCTTAGTGACTCAGTCTT GACATGGGCCAAGGATCAGCGCCCAGTGGGCGAGGTGGGCAGGAGCGCAGGGGATGAGGGGCCGGCGGCC TTGGCCATCGTGCAGGCCTCCCCCGTAGACTGCGGTGTGTATCGGTGCACCATCCACAATGAGCACGGCT CGGCCTCCACCGACTTCTGCCTCAGCCCTGAGGTGTTGTCAGGATTCATCTCCAGAGAAGAAGGTGAAGT TGGAGAAGAGATTGAGATGACCCCTATGGTGTTTGCTAAGGGTCTGGCTGACTCTGGCTGCTGGGGGGAC AAGCTCTTTGGGCGACTGGTAAGCGAGGAGCTCCGAGGGGGTGGATATGGGTGTGGCCTTCGGAAGGCCT CCCAGGCCAAGGTCATCTACGGGCTGGAACCCATCTTCGAGTCGGGCCGCACGTGCATCATCAAGGTGTC CAGCCTGCTTGTGTTTGGGCCCAGCAGTGAGACTTCTCTTGTGGGCAGAAACTACGACGTCACCATCCAG GGGTGCAAGATCCAGAACATGAGTCGGGAGTACTGCAAAATCTTCGCAGCAGAAGCCCGGGCCGCGCCTG GCTTTGGGGAGGTGCCTGAGATCATCCCACTGTATCTGATCTACCGGCCTGCAAACAATATCCCATATGC TACCCTGGAGGAAGACCTGGGCAAGCCCCTGGAGTCTTACTGTTCTCGGGAATGGGGCTGTGCTGAGGCT CCGACAGCATCTGGCAGCTCTGAGGCCATGCAGAAATGCCAGACCTTCCAACACTGGCTGTATCAGTGGA CAAATGGCAGCTTCCTTGTCACAGACTTGGCAGGGGTTGACTGGAAGATGACTGATGTGCAGATTGCTAC CAAACTCCGAGGATACCAGGGCCTCAAGGAAAGCTGCTTCCCTGCCCTGCTGGACCGGTTCGCCTCCTCC CACCAGTGCAATGCCTACTGTGAGCTGCTGGGGCTGACACCTCTCAAGGGCCCGGAGGCGGCCCACCCCC AAGCCAAAGCCAAAGGCTCTAAGAGTCCATCTGCTGGCAGGAAAGGCTCCCAGCTGAGTCCTCAGCCCCA GAAGAAAGGCCTCCCTAGTCCTCAGGGCACCCGGAAGAGTGCTCCAAGTTCCAAGGCCACCCCTCAGGCC TCAGAGCCAGTCACCACTCAGTTGTTGGGACAGCCTCCCACCCAAGAGGAGGGCTCCAAGGCCCAGGGCA TGCGGTAG
Translation (1705 aa): MGSRRAPSRGWGAGGRSGAGGDGEDDGPVWIPSPASRSYLLSVRPETSLSSNRLSHPSSGRSTFCSIIAQ LTEETQPLFETTLKSRSVSEDSDVRFTCIVTGYPEPEVTWYKDDTELDRYCGLPKYEITHQGNRHTLQLY RCREEDAAIYQASAQNSKGIVSCSGVLEVGTMTEYKIHQRWFAKLKRKAAAKLREIEQSWKHEKAVPGEV DTLRKLSPDRFQRKRRLSGAQAPGPSVPTREPEGGTLAAWQEGETETAQHSGLGLINSFASGEVTTNGEA APENGEDGEHGLLTYICDAMELGPQRALKEESGAKKKKKDEESKQGLRKPELEKAAQSRRSSENCIPSSD EPDSCGTQGPVGVEQVQTQPRGRAARGPGSSGTDSTRKPASAVGTPDKAQKAPGPGPGQEVYFSLKDMYL ENTQAVRPLGEEGPQTLSVRAPGESPKGKAPLRARSEGVPGAPGQPTHSLTPQPTRPFNRKRFAPPKPKG EATTDSKPISSLSQAPECGAQSLGKAPPQASVQVPTPPARRRHGTRDSTLQGQAGHRTPGEVLECQTTTA PTMSASSSSDVASIGVSTSGSQGIIEPMDMETQEDGRTSANQRTGSKKNVQADGKIQVDGRTRGDGTQTA QRTRADRKTQVDAGTQESKRPQSDRSAQKGMMTQGRAETQLETTQAGEKIQEDRKAQADKGTQEDRRMQG EKGMQGEKGTQSEGSAPTAMEGQSEQEVATSLGPPSRTPKLPPTAGPRAPLNIECFVQTPEGSCFPKKPG CLPRSEEAVVTASRNHEQTVLGPLSGNLMLPAQPPHEGSVEQVGGERCRGPQSSGPVEAKQEDSPFQCPK EERPGGVPCMDQGGCPLAGLSQEVPTMPSLPGTGLTASPKAGPCSTPTSQHGSTATFLPSEDQVLMSSAP TLHLGLGTPTQSHPPETMATSSEGACAQVPDVEGRTPGPRSCDPGLIDSLKNYLLLLLKLSSTETSGAGG ESQVGAATGGLVPSATLTPTVEVAGLSPRTSRRILERVENNHLVQSAQTLLLSPCTSRRLTGLLDREVQA GRQALAAARGSWGPGPSSLTVPAIVVDEEDPGLASEGASEGEGEVSPEGPGLLGASQESSMAGRLGEAGG QAAPGQGPSAESIAQEPSQEEKFPGEALTGLPAATPEELALGARRKRFLPKVRAAGDGEATTPEERESPT VSPRGPRKSLVPGSPGTPGRERRSPTQGRKASMLEVPRAEEELAAGDLGPSPKAGGLDTEVALDEGKQET LAKPRKAKDLLKAPQVIRKIRVEQFPDASGSLKLWCQFFNILSDSVLTWAKDQRPVGEVGRSAGDEGPAA LAIVQASPVDCGVYRCTIHNEHGSASTDFCLSPEVLSGFISREEGEVGEEIEMTPMVFAKGLADSGCWGD KLFGRLVSEELRGGGYGCGLRKASQAKVIYGLEPIFESGRTCIIKVSSLLVFGPSSETSLVGRNYDVTIQ GCKIQNMSREYCKIFAAEARAAPGFGEVPEIIPLYLIYRPANNIPYATLEEDLGKPLESYCSREWGCAEA PTASGSSEAMQKCQTFQHWLYQWTNGSFLVTDLAGVDWKMTDVQIATKLRGYQGLKESCFPALLDRFASS HQCNAYCELLGLTPLKGPEAAHPQAKAKGSKSPSAGRKGSQLSPQPQKKGLPSPQGTRKSAPSSKATPQA SEPVTTQLLGQPPTQEEGSKAQGMR
|