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Report for CCDS10391.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10391.1 Public Homo sapiens 15 SNRPA1 24 110 108 CCDS HistoryNCBI Gene:6627Re-query CCDS DB by CCDS ID:10391.1Re-query CCDS DB by GeneID:6627See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10391.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000254193.11 ENSP00000254193.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000254193.11Link to Ensembl Protein Viewer:ENSP00000254193.6Re-query CCDS DB by Nucleotide ID:ENST00000254193Re-query CCDS DB by Protein ID:ENSP00000254193
Original member Current member NCBI NM_003090.4 NP_003081.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003090.4Link to Protein Sequence:NP_003081.2Re-query CCDS DB by Nucleotide ID:NM_003090Re-query CCDS DB by Protein ID:NP_003081Link to BLAST:NP_003081.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003081.2 255 P09661 255 100% 0 0

Chromosomal Locations for CCDS 10391.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 101281724 101281782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101284967 101285060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101285726 101285801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101286214 101286293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101286908 101287010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101287656 101287702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101291962 101292040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101293025 101293172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101295097 101295178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGGTCAAGCTGACGGCGGAGCTGATCGAGCAGGCGGCGCAGTACACCAACGCGGTGCGCGACCGGGAGC
TGGACCTCCGGGGGTATAAAATTCCCGTCATTGAAAATCTAGGTGCTACGTTAGACCAGTTTGATGCTAT
TGATTTTTCTGACAATGAGATCAGGAAACTGGATGGTTTTCCTTTGTTGAGAAGACTGAAAACATTGTTA
GTGAACAACAACAGAATATGCCGTATAGGTGAGGGACTTGATCAGGCTCTGCCCTGTCTGACAGAACTCA
TTCTCACCAATAATAGTCTCGTGGAACTGGGTGATCTGGACCCTCTGGCATCTCTCAAATCGCTGACTTA
CCTAAGTATCCTAAGAAATCCGGTAACCAATAAGAAGCATTACAGATTGTATGTGATTTATAAAGTTCCG
CAAGTCAGAGTACTGGATTTCCAGAAAGTGAAACTAAAAGAGCGTCAGGAAGCAGAGAAAATGTTCAAGG
GCAAACGGGGTGCACAGCTTGCAAAGGATATTGCCAGGAGAAGCAAAACTTTTAATCCAGGTGCTGGTTT
GCCAACTGACAAAAAGAAAGGTGGGCCATCTCCAGGGGATGTAGAAGCAATCAAGAATGCCATAGCAAAT
GCTTCAACTCTGGCTGAAGTGGAGAGGCTGAAGGGGTTGCTGCAGTCTGGTCAGATCCCTGGCAGAGAAC
GCAGATCAGGGCCCACTGATGATGGTGAAGAAGAGATGGAAGAAGACACAGTCACAAACGGGTCCTGA

Translation (255 aa):
MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLL
VNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVP
QVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKTFNPGAGLPTDKKKGGPSPGDVEAIKNAIAN
ASTLAEVERLKGLLQSGQIPGRERRSGPTDDGEEEMEEDTVTNGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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