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Report for CCDS10410.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10410.1 Public Homo sapiens 16 CAPN15 24 110 108 CCDS HistoryNCBI Gene:6650Re-query CCDS DB by CCDS ID:10410.1Re-query CCDS DB by GeneID:6650See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10410.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000219611.7 ENSP00000219611.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000219611.7Link to Ensembl Protein Viewer:ENSP00000219611.2Re-query CCDS DB by Nucleotide ID:ENST00000219611Re-query CCDS DB by Protein ID:ENSP00000219611
Original member Current member NCBI NM_005632.3 NP_005623.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005632.3Link to Protein Sequence:NP_005623.1Re-query CCDS DB by Nucleotide ID:NM_005632Re-query CCDS DB by Protein ID:NP_005623Link to BLAST:NP_005623.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005623.1 1086 O75808-1 1086 100% 0 0

Chromosomal Locations for CCDS 10410.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 546839 548287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 548993 549201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 549288 549471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 549615 549838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 551302 551427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 551512 551664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 552051 552212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 552301 552530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 552605 552771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 552863 553041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 553339 553516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3261 nt):
ATGGCCACGGTCGGAGAGTGGTCCTGTGTGCGCTGCACCTTCCTGAACCCGGCCGGCCAGCGCCAGTGCT
CCATCTGCGAGGCTCCCCGGCACAAGCCCGACCTCAACCACATCCTGCGGCTCAGCGTGGAGGAGCAGAA
ATGGCCCTGCGCCCGCTGCACCTTCCGCAACTTCCTGGGCAAGGAGGCCTGCGAGGTGTGCGGCTTCACC
CCGGAGCCTGCGCCTGGGGCTGCCTTCCTGCCAGTCCTCAACGGGGTCCTCCCCAAGCCACCCGCCATCC
TGGGGGAGCCCAAGGGCAGCTGCCAGGAGGAAGCAGGTCCAGTGAGGACTGCGGGGCTGGTGGCCACGGA
GCCCGCCAGGGGGCAGTGCGAGGACAAGGACGAGGAGGAGAAGGAGGAGCAGGAGGAGGAGGAGGGAGCG
GCGGAGCCCAGAGGGGGCTGGGCGTGTCCGCGTTGCACGCTGCACAACACGCCCGTGGCCAGCTCCTGCT
CCGTCTGCGGGGGCCCACGCAGGCTCTCGCTGCCACGGATCCCTCCTGAGGCCCTGGTGGTCCCGGAAGT
GGTGGCCCCGGCCGGCTTCCACGTCGTGCCTGCCGCGCCTCCACCTGGCCTCCCCGGGGAAGGTGCCGAG
GCCAACCCCCCAGCCACCAGCCAGGGCCCAGCTGCCGAACCAGAGCCGCCCAGGGTCCCGCCCTTCAGCC
CCTTCTCGTCCACCCTGCAGAACAACCCCGTGCCGCGCAGCCGACGCGAGGTTCCCCCCCAGCTGCAGCC
ACCGGTGCCTGAGGCTGCCCAGCCGTCACCCTCTGCCGGCTGCAGGGGAGCCCCCCAGGGCTCGGGCTGG
GCTGGGGCCTCCCGCCTAGCAGAGTTGCTGTCTGGCAAGCGGCTGAGTGTGCTGGAGGAAGAGGCCACGG
AGGGTGGCACCAGCCGCGTAGAGGCCGGCAGCTCCACCTCGGGCAGTGACATCATTGACCTGGCCGGAGA
CACCGTGCGTTACACGCCCGCCAGCCCCTCCAGCCCCGACTTCACCACCTGGTCATGTGCCAAGTGCACG
CTCAGAAACCCCACAGTGGCCCCCAGGTGCTCGGCCTGCGGCTGCTCCAAACTGCACGGCTTCCAGGAGC
ATGGCGAGCCCCCCACCCACTGCCCCGACTGTGGGGCCGACAAGCCCAGCCCCTGCGGCAGAAGCTGCGG
ACGGGTGTCCTCGGCCCAGAAGGCCGCCCGCGTCCTGCCCGAGCGCCCGGGCCAGTGGGCCTGCCCTGCC
TGTACCCTGCTCAACGCACTGCGGGCCAAGCACTGCGCCGCCTGCCACACGCCTCAGCTCCTGGTGGCCC
AGCGGCGGGGGGCCGCGCCCCTGAGGCGCAGGGAGAGCATGCACGTGGAGCAGCGGCGGCAGACAGACGA
GGGCGAGGCCAAGGCACTCTGGGAGAACATCGTGGCCTTCTGCCGGGAGAACAATGTGAGCTTCGTGGAT
GACAGCTTCCCTCCCGGGCCCGAGTCTGTCGGCTTCCCCGCGGGTGACAGCGTGCAGCAGCGTGTGAGGC
AGTGGCTGCGACCCCAGGAGATCAACTGCTCCGTCTTCAGGGACCACAGGGCCACGTGGTCTGTGTTCCA
CACACTGCGGCCCTCAGACATCCTGCAGGGGCTGCTGGGGAACTGCTGGTTCCTGAGCGCCCTGGCGGTG
CTGGCGGAGCGGCCGGACCTGGTGGAGCGGGTGATGGTCACGCGCAGCCTGTGTGCAGAGGGCGCCTACC
AGGTGCGGCTGTGCAAGGACGGCACGTGGACCACGGTGCTGGTGGACGACATGCTGCCCTGTGATGAGGC
CGGCTGCCTCCTCTTCTCACAGGCGCAGCGGAAGCAGCTGTGGGTGGCCCTCATCGAGAAGGCGCTGGCC
AAGCTGCACGGCTCCTACTTTGCGCTCCAGGCGGGCCGCGCCATCGAAGGCCTGGCCACGCTCACCGGCG
CCCCCTGTGAGAGCCTGGCGCTGCAGCTCAGCTCCACTAACCCCCGCGAGGAGCCCGTTGACACTGACCT
CATCTGGGCCAAAATGCTGAGTTCTAAGGAGGCTGGGTTCCTCATGGGTGCCTCCTGTGGCGGGGGCAAC
ATGAAGGTGGACGATTCGGCCTACGAGAGCCTGGGCCTGCGCCCCCGGCATGCCTACTCCATCCTGGATG
TCCGAGATGTCCAGGGCACCAGGCTTCTGCGGCTCCGAAACCCGTGGGGCCGTTTCTCCTGGAACGGCAG
CTGGTCCGACGAGTGGCCACACTGGCCGGGGCACCTGCGTGGCGAGCTCATGCCGCACGGCAGCAGTGAG
GGTGTCTTCTGGATGGAGTACGGCGACTTTGTCAGGTACTTCGACTCCGTGGACATCTGTAAGGTGCACT
CGGACTGGCAGGAGGCGCGGGTGCAGGGCTGCTTTCCCAGCTCGGCCAGCGCGCCCGTGGGGGTAACAGC
GCTCACGGTGCTGGAGCGGGCCTCGCTGGAGTTCGCGCTCTTCCAGGAGGGCAGCAGGCGCTCGGACGCC
GTGGACAGCCACCTGCTGGACCTGTGCATCCTGGTGTTCCGGGCCACGTTCGGCAGCGGCGGCCACCTCA
GCCTGGGCCGCCTCCTGGCCCACAGTAAGCGCGCGGTCAAGAAGTTCGTCAGCTGCGACGTCATGCTGGA
GCCTGGCGAGTACGCTGTGGTGTGCTGCGCCTTCAACCACTGGGGGCCGCCCCTGCCGGGCACCCCTGCC
CCCCAGGCCTCCAGCCCCTCGGCAGGGGTCCCGAGAGCCTCCCCAGAGCCGCCGGGCCACGTGCTGGCTG
TGTACAGCTCGAGGCTGGTCATGGTGGAGCCCGTGGAAGCCCAGCCGACCACGCTGGCCGACGCCATCAT
CCTGCTCACCGAGAGCCGCGGAGAGCGGCACGAGGGCCGTGAGGGCATGACCTGCTACTACCTGACACAC
GGTTGGGCGGGGCTCATCGTGGTGGTGGAGAACCGACACCCCAAGGCCTACCTGCACGTGCAGTGTGACT
GCACCGACAGCTTCAACGTGGTGTCCACACGCGGCAGCCTGCGTACCCAGGATAGCGTGCCACCCCTGCA
CAGGCAGGTCCTGGTGATCTTGTCCCAGCTAGAGGGCAACGCCGGCTTCTCTATCACCCACCGCCTGGCA
CATCGCAAGGCAGCCCAGGCCTTCCTCAGTGACTGGACAGCCTCCAAGGGGACCCACAGCCCCCCACTCA
CGCCAGAGGTCGCCGGTCTGCATGGGCCCCGACCGCTGTGA

Translation (1086 aa):
MATVGEWSCVRCTFLNPAGQRQCSICEAPRHKPDLNHILRLSVEEQKWPCARCTFRNFLGKEACEVCGFT
PEPAPGAAFLPVLNGVLPKPPAILGEPKGSCQEEAGPVRTAGLVATEPARGQCEDKDEEEKEEQEEEEGA
AEPRGGWACPRCTLHNTPVASSCSVCGGPRRLSLPRIPPEALVVPEVVAPAGFHVVPAAPPPGLPGEGAE
ANPPATSQGPAAEPEPPRVPPFSPFSSTLQNNPVPRSRREVPPQLQPPVPEAAQPSPSAGCRGAPQGSGW
AGASRLAELLSGKRLSVLEEEATEGGTSRVEAGSSTSGSDIIDLAGDTVRYTPASPSSPDFTTWSCAKCT
LRNPTVAPRCSACGCSKLHGFQEHGEPPTHCPDCGADKPSPCGRSCGRVSSAQKAARVLPERPGQWACPA
CTLLNALRAKHCAACHTPQLLVAQRRGAAPLRRRESMHVEQRRQTDEGEAKALWENIVAFCRENNVSFVD
DSFPPGPESVGFPAGDSVQQRVRQWLRPQEINCSVFRDHRATWSVFHTLRPSDILQGLLGNCWFLSALAV
LAERPDLVERVMVTRSLCAEGAYQVRLCKDGTWTTVLVDDMLPCDEAGCLLFSQAQRKQLWVALIEKALA
KLHGSYFALQAGRAIEGLATLTGAPCESLALQLSSTNPREEPVDTDLIWAKMLSSKEAGFLMGASCGGGN
MKVDDSAYESLGLRPRHAYSILDVRDVQGTRLLRLRNPWGRFSWNGSWSDEWPHWPGHLRGELMPHGSSE
GVFWMEYGDFVRYFDSVDICKVHSDWQEARVQGCFPSSASAPVGVTALTVLERASLEFALFQEGSRRSDA
VDSHLLDLCILVFRATFGSGGHLSLGRLLAHSKRAVKKFVSCDVMLEPGEYAVVCCAFNHWGPPLPGTPA
PQASSPSAGVPRASPEPPGHVLAVYSSRLVMVEPVEAQPTTLADAIILLTESRGERHEGREGMTCYYLTH
GWAGLIVVVENRHPKAYLHVQCDCTDSFNVVSTRGSLRTQDSVPPLHRQVLVILSQLEGNAGFSITHRLA
HRKAAQAFLSDWTASKGTHSPPLTPEVAGLHGPRPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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