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Report for CCDS10425.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10425.1 Public Homo sapiens 16 CIAO3 24 110 108 CCDS HistoryNCBI Gene:64428Re-query CCDS DB by CCDS ID:10425.1Re-query CCDS DB by GeneID:64428See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10425.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000251588.7 ENSP00000251588.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000251588.7Link to Ensembl Protein Viewer:ENSP00000251588.2Re-query CCDS DB by Nucleotide ID:ENST00000251588Re-query CCDS DB by Protein ID:ENSP00000251588
Original member Current member NCBI NM_022493.3 NP_071938.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022493.3Link to Protein Sequence:NP_071938.1Re-query CCDS DB by Nucleotide ID:NM_022493Re-query CCDS DB by Protein ID:NP_071938Link to BLAST:NP_071938.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071938.1 476 Q9H6Q4-1 476 100% 0 0

Chromosomal Locations for CCDS 10425.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 730417 730655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 730843 731000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 731565 731702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 732301 732373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 733298 733427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 734229 734347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 734737 734871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 736266 736398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 737186 737329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 739643 739738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 740920 740985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGGCGTCGCCCTTCAGCGGGGCGCTGCAGCTGACGGACCTGGATGACTTCATCGGGCCGTCTCAGGAGT
GCATCAAGCCTGTCAAAGTGGAAAAAAGGGCGGGAAGTGGCGTGGCCAAGATTCGCATTGAAGATGACGG
GAGCTACTTCCAAATTAACCAAGACGGCGGGACCCGGAGGCTGGAGAAGGCCAAGGTCTCGCTAAACGAC
TGCCTGGCGTGCAGCGGCTGCATCACCTCCGCAGAGACCGTGCTTATCACCCAGCAGAGCCACGAGGAGC
TGAAGAAGGTTCTAGATGCTAACAAGATGGCGGCACCCAGTCAGCAGAGGCTGGTTGTAGTTTCGGTCTC
ACCACAGTCTAGAGCATCGCTGGCTGCACGGTTTCAGCTGAATCCTACAGATACTGCCAGGAAATTAACC
TCATTCTTTAAAAAAATAGGGGTGCACTTCGTCTTCGACACCGCCTTCTCAAGGCACTTCAGCCTCCTGG
AGAGCCAGCGAGAGTTTGTGCGGCGATTCCGAGGACAGGCCGACTGCAGACAGGCGCTGCCCCTGCTGGC
CTCTGCCTGCCCAGGCTGGATCTGCTATGCCGAGAAGACTCACGGCAGCTTCATCCTCCCCCACATCAGC
ACCGCCCGGTCCCCGCAGCAGGTCATGGGCTCCCTGGTCAAGGACTTCTTCGCCCAGCAGCAGCACTTGA
CCCCTGACAAGATCTACCACGTCACAGTGATGCCCTGCTATGACAAAAAGCTGGAAGCCTCCAGACCCGA
CTTTTTCAACCAGGAGCACCAGACACGGGATGTGGACTGTGTCCTCACAACAGGAGAAGTTTTCAGGTTG
CTGGAGGAAGAGGGCGTCTCCCTCCCCGACCTGGAACCAGCCCCTCTGGACAGCCTGTGCAGCGGTGCCT
CTGCAGAGGAGCCCACCAGCCATCGGGGAGGGGGCTCGGGGGGCTACCTGGAGCACGTGTTCCGGCACGC
GGCCCGAGAGCTCTTTGGAATCCATGTGGCTGAGGTTACCTACAAACCCCTGAGGAACAAAGACTTCCAG
GAGGTGACACTGGAGAAGGAGGGCCAGGTGCTGCTGCACTTCGCAATGGCGTACGGCTTCCGCAACATCC
AGAACCTGGTGCAGAGGCTCAAACGAGGGCGCTGCCCCTACCACTACGTGGAGGTCATGGCCTGCCCCTC
AGGCTGCCTGAACGGCGGGGGCCAGCTCCAGGCCCCAGACAGGCCCAGCAGAGAGCTCCTCCAGCACGTG
GAGAGACTGTACGGCATGGTCCGGGCTGAGGCGCCCGAGGACGCGCCTGGGGTTCAGGAGCTGTACACAC
ACTGGCTGCAGGGCACGGACTCGGAGTGTGCAGGTCGCTTGCTGCATACGCAGTACCACGCCGTGGAGAA
GGCCAGCACTGGCCTGGGCATCCGGTGGTAG

Translation (476 aa):
MASPFSGALQLTDLDDFIGPSQECIKPVKVEKRAGSGVAKIRIEDDGSYFQINQDGGTRRLEKAKVSLND
CLACSGCITSAETVLITQQSHEELKKVLDANKMAAPSQQRLVVVSVSPQSRASLAARFQLNPTDTARKLT
SFFKKIGVHFVFDTAFSRHFSLLESQREFVRRFRGQADCRQALPLLASACPGWICYAEKTHGSFILPHIS
TARSPQQVMGSLVKDFFAQQQHLTPDKIYHVTVMPCYDKKLEASRPDFFNQEHQTRDVDCVLTTGEVFRL
LEEEGVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFGIHVAEVTYKPLRNKDFQ
EVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEVMACPSGCLNGGGQLQAPDRPSRELLQHV
ERLYGMVRAEAPEDAPGVQELYTHWLQGTDSECAGRLLHTQYHAVEKASTGLGIRW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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