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Report for CCDS1044.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1044.2 Public Homo sapiens 1 S100A2 24 110 108 CCDS HistoryNCBI Gene:6273Re-query CCDS DB by CCDS ID:1044.2Re-query CCDS DB by GeneID:6273See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 1044.1
The coding region has been updated to extend the N-terminus to one that is more supported by available proteomics data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 1044.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368708.9 ENSP00000357697.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368708.9Link to Ensembl Protein Viewer:ENSP00000357697.4Re-query CCDS DB by Nucleotide ID:ENST00000368708Re-query CCDS DB by Protein ID:ENSP00000357697
Original member Current member EBI ENST00000368709.6 ENSP00000357698.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368709.6Link to Ensembl Protein Viewer:ENSP00000357698.2Re-query CCDS DB by Nucleotide ID:ENST00000368709Re-query CCDS DB by Protein ID:ENSP00000357698
Original member Current member EBI ENST00000368710.6 ENSP00000357699.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368710.6Link to Ensembl Protein Viewer:ENSP00000357699.2Re-query CCDS DB by Nucleotide ID:ENST00000368710Re-query CCDS DB by Protein ID:ENSP00000357699
Original member Current member EBI ENST00000487430.7 ENSP00000473260.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000487430.7Link to Ensembl Protein Viewer:ENSP00000473260.2Re-query CCDS DB by Nucleotide ID:ENST00000487430Re-query CCDS DB by Protein ID:ENSP00000473260
Original member Current member NCBI NM_005978.4 NP_005969.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005978.4Link to Protein Sequence:NP_005969.2Re-query CCDS DB by Nucleotide ID:NM_005978Re-query CCDS DB by Protein ID:NP_005969Link to BLAST:NP_005969.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005969.2 98 P29034 98 100% 0 0

Chromosomal Locations for CCDS 1044.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 153561439 153561591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153563734 153563877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (297 nt):
ATGATGTGCAGTTCTCTGGAGCAGGCGCTGGCTGTGCTGGTCACTACCTTCCACAAGTACTCCTGCCAAG
AGGGCGACAAGTTCAAGCTGAGTAAGGGGGAAATGAAGGAACTTCTGCACAAGGAGCTGCCCAGCTTTGT
GGGGGAGAAAGTGGATGAGGAGGGGCTGAAGAAGCTGATGGGCAGCCTGGATGAGAACAGTGACCAGCAG
GTGGACTTCCAGGAGTATGCTGTTTTCCTGGCACTCATCACTGTCATGTGCAATGACTTCTTCCAGGGCT
GCCCAGACCGACCCTGA

Translation (98 aa):
MMCSSLEQALAVLVTTFHKYSCQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQ
VDFQEYAVFLALITVMCNDFFQGCPDRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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