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Report for CCDS10493.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10493.2 Public Homo sapiens 16 ZSCAN10 24 110 108 CCDS HistoryNCBI Gene:84891Re-query CCDS DB by CCDS ID:10493.2Re-query CCDS DB by GeneID:84891See the combined annotation on chromosome 16 in Sequence Viewer

Public Note for CCDS 10493.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 10493.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000576985.6 ENSP00000458879.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000576985.6Link to Ensembl Protein Viewer:ENSP00000458879.2Re-query CCDS DB by Nucleotide ID:ENST00000576985Re-query CCDS DB by Protein ID:ENSP00000458879
Original member Current member NCBI NM_032805.3 NP_116194.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032805.3Link to Protein Sequence:NP_116194.2Re-query CCDS DB by Nucleotide ID:NM_032805Re-query CCDS DB by Protein ID:NP_116194Link to BLAST:NP_116194.2

Chromosomal Locations for CCDS 10493.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 3089091 3090646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3091540 3091597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3091764 3091828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3092049 3092316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3092542 3092937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2343 nt):
ATGCTTGGAGAATCAGTCCCAGCTGCCGTGGAGCAGGAGCAGCTGGGGGAAGTCAAGCTGGAGGAGGAGG
AGGCTGTCAGCCCAGAGGACCCCAGGCGACCAGAGTCCAGGCTGAGGCCCGAGGTGGCTCACCAGCTGTT
CAGATGCTTCCAGTATCAGGAGGACATGGGGCCACGGGCGTCCCTGAGCCGGCTCCGGGAGCTCTGCGGC
CACTGGCTGCGGCCGGCTCTGCACACCAAGAAACAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGA
GTGTGCTGCCTCCGCACCTCCTGGGCCGCCTGCAGGGGCAGCCGCTCAGGGATGGGGAGGAGGTGGTGCT
GCTGCTCGAGGGCATCCACCGGGAGCCCAGCCACGCGGGGCCGCTGGATTTTAGTTGTAATGCTGGCAAG
AGTTGTCCCCGTGCAGACGTCACCTTGGAGGAAAAGGGGTGTGCTTCCCAGGTCCCCAGCCACAGCCCCA
AGAAGGAATTGCCTGCGGAAGAGCCTTCAGTGCTGGGCCCATCGGATGAGCCTCCCCGACCCCAGCCAAG
GGCTGCCCAGCCTGCTGAGCCGGGACAGTGGAGGCTTCCCCCAAGTTCAAAGCAGCCGCTGAGCCCGGGG
CCCCAGAAGACATTCCAGGCCCTGCAAGAAAGCAGTCCCCAGGGCCCCTCACCATGGCCAGAGGAGAGTT
CCCGAGATCAGGAGCTGGCGGCTGTGCTGGAGTGCCTGACCTTTGAGGATGTGCCAGAGAATAAGGCGTG
GCCTGCACACCCCCTGGGATTCGGAAGCAGAACCCCAGACAAGGAGGAATTTAAACAAGAAGAGCCCAAA
GGGGCTGCCTGGCCCACTCCCATCTTAGCAGAGTCCCAGGCAGATAGTCCTGGGGTGCCGGGAGAGCCTT
GCGCCCAGTCGCTCGGACGGGGCGCTGCGGCTAGCGGCCCTGGTGAAGATGGGTCCCTTCTTGGCAGCAG
TGAAATTTTGGAGGTCAAAGTGGCTGAGGGCGTCCCCGAGCCCAATCCGGAGTTGCAGTTCATCTGCGCG
GACTGCGGGGTGAGCTTCCCGCAGCTGTCTCGCCTGAAGGCGCACCAGCTGCGCTCGCACCCGGCTGGGC
GCTCCTTCCTGTGCCTTTGCTGCGGGAAGAGCTTCGGCCGCAGCTCCATTCTCAAGCTGCACATGCGCAC
TCACACGGACGAGCGGCCGCACGCCTGCCACCTGTGCGGCCACCGCTTCCGCCAGAGCTCGCACCTGAGC
AAGCACCTGCTGACCCACTCCTCCGAACCCGCCTTCCTGTGCGCAGAGTGCGGCCGCGGCTTCCAGCGCC
GCGCCAGCCTTGTGCAGCACCTGCTGGCGCACGCCCAGGACCAGAAGCCGCCCTGCGCTCCTGAGAGTAA
GGCCGAAGCGCCGCCACTGACCGATGTCCTGTGCTCCCACTGCGGCCAGAGCTTCCAGCGCCGCTCCAGC
CTCAAGCGCCACCTGCGGATCCACGCCAGGGACAAGGACCGCCGGTCCTCCGAAGGCTCCGGCAGCCGCC
GCCGGGACTCCGACCGGAGGCCCTTCGTGTGCAGCGACTGCGGCAAGGCCTTCCGGCGCAGCGAGCACCT
GGTGGCCCACCGGAGGGTGCACACGGGCGAGCGGCCCTTCTCCTGCCAGGCTTGCGGCCGCAGCTTCACG
CAGAGCTCGCAGCTGGTCAGCCACCAACGGGTGCACACGGGCGAGAAGCCCTACGCCTGTCCGCAGTGCG
GGAAGCGCTTTGTGCGCCGGGCCAGCCTTGCCCGCCACCTGCTGACCCACGGTGGCCCTCGGCCCCACCA
CTGCACCCAGTGCGGGAAGAGTTTCGGCCAGACCCAGGATCTGGCCCGCCACCAGCGCAGCCACACGGGC
GAGAAGCCCTGCCGCTGCAGCGAGTGCGGTGAGGGCTTCAGCCAGAGCGCCCACCTGGCGCGCCACCAGC
GCATCCACACAGGGGAGAAGCCCCACGCCTGCGACACCTGCGGCCACCGTTTCCGCAATAGCTCCAACCT
GGCCCGCCATCGCCGCAGCCACACGGGCGAGCGGCCCTACAGCTGTCAGACGTGCGGTCGCAGCTTCCGG
CGCAACGCGCATCTGCGGCGGCACCTGGCTACCCATGCGGAGCCCGGGCAGGAGCAGGCCGAGCCCCCGC
AGGAGTGCGTGGAGTGCGGGAAGAGCTTCAGCCGCAGCTGCAATCTGCTGCGACACCTGCTGGTGCACAC
GGGCGCCAGGCCCTACTCCTGCACGCAGTGTGGCCGCAGCTTCAGCCGCAACTCCCACCTGCTGCGCCAC
CTGCGCACCCACGCCCGCGAGACGCTGTACTAG

Translation (780 aa):
MLGESVPAAVEQEQLGEVKLEEEEAVSPEDPRRPESRLRPEVAHQLFRCFQYQEDMGPRASLSRLRELCG
HWLRPALHTKKQILELLVLEQFLSVLPPHLLGRLQGQPLRDGEEVVLLLEGIHREPSHAGPLDFSCNAGK
SCPRADVTLEEKGCASQVPSHSPKKELPAEEPSVLGPSDEPPRPQPRAAQPAEPGQWRLPPSSKQPLSPG
PQKTFQALQESSPQGPSPWPEESSRDQELAAVLECLTFEDVPENKAWPAHPLGFGSRTPDKEEFKQEEPK
GAAWPTPILAESQADSPGVPGEPCAQSLGRGAAASGPGEDGSLLGSSEILEVKVAEGVPEPNPELQFICA
DCGVSFPQLSRLKAHQLRSHPAGRSFLCLCCGKSFGRSSILKLHMRTHTDERPHACHLCGHRFRQSSHLS
KHLLTHSSEPAFLCAECGRGFQRRASLVQHLLAHAQDQKPPCAPESKAEAPPLTDVLCSHCGQSFQRRSS
LKRHLRIHARDKDRRSSEGSGSRRRDSDRRPFVCSDCGKAFRRSEHLVAHRRVHTGERPFSCQACGRSFT
QSSQLVSHQRVHTGEKPYACPQCGKRFVRRASLARHLLTHGGPRPHHCTQCGKSFGQTQDLARHQRSHTG
EKPCRCSECGEGFSQSAHLARHQRIHTGEKPHACDTCGHRFRNSSNLARHRRSHTGERPYSCQTCGRSFR
RNAHLRRHLATHAEPGQEQAEPPQECVECGKSFSRSCNLLRHLLVHTGARPYSCTQCGRSFSRNSHLLRH
LRTHARETLY


Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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