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Report for CCDS10605.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10605.1 Public Homo sapiens 16 POLR3E 24 110 108 CCDS HistoryNCBI Gene:55718Re-query CCDS DB by CCDS ID:10605.1Re-query CCDS DB by GeneID:55718See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10605.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000299853.10 ENSP00000299853.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000299853.10Link to Ensembl Protein Viewer:ENSP00000299853.5Re-query CCDS DB by Nucleotide ID:ENST00000299853Re-query CCDS DB by Protein ID:ENSP00000299853
Original member Current member NCBI NM_018119.4 NP_060589.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018119.4Link to Protein Sequence:NP_060589.1Re-query CCDS DB by Nucleotide ID:NM_018119Re-query CCDS DB by Protein ID:NP_060589Link to BLAST:NP_060589.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060589.1 708 Q9NVU0-1 708 100% 0 0

Chromosomal Locations for CCDS 10605.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 22302969 22303004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22305156 22305206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22308148 22308225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22308925 22309040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22309428 22309510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22313620 22313727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22314079 22314128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22315089 22315208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22316601 22316686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22316995 22317039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22317115 22317206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22318826 22318946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22322850 22322931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22324354 22324413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22324503 22324660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22325205 22325266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22325761 22326278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22328510 22328587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22332060 22332185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22333644 22333700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2127 nt):
ATGGCCAATGAAGAGGATGACCCAGTTGTACAGGAGATCGATGTGTACTTGGCCAAGAGTCTGGCGGAAA
AGCTGTATCTATTTCAGTACCCTGTGCGTCCAGCCTCGATGACCTACGATGACATTCCGCACCTCTCAGC
CAAGATCAAGCCCAAGCAGCAGAAGGTAGAGCTTGAGATGGCCATCGACACCCTGAACCCCAACTATTGC
CGCAGCAAAGGGGAGCAGATTGCGCTGAACGTGGACGGGGCCTGCGCCGACGAGACCAGCACGTATTCCT
CGAAGCTGATGGACAAGCAGACCTTCTGCTCTTCCCAGACCACCAGTAACACATCCCGTTATGCCGCTGC
ACTCTACAGGCAAGGTGAGCTCCACCTGACACCTTTACATGGCATCCTGCAGCTGCGGCCCAGCTTCTCC
TACCTGGATAAGGCTGACGCCAAGCACCGGGAGAGGGAGGCGGCCAACGAGGCAGGGGACTCTTCACAGG
ATGAGGCGGAAGACGATGTTAAGCAGATCACGGTGCGGTTCTCCCGGCCGGAGTCAGAGCAGGCCCGCCA
GCGCCGTGTGCAGTCCTATGAGTTCCTGCAGAAGAAGCACGCAGAGGAGCCCTGGGTCCACCTGCATTAC
TATGGCCTGAGGGACAGTCGCTCTGAGCATGAGCGTCAGTACCTGCTGTGCCCCGGCTCAAGCGGGGTGG
AGAACACGGAGCTCGTCAAGTCACCCAGTGAGTACCTGATGATGCTGATGCCACCCAGCCAGGAGGAGGA
GAAAGACAAGCCTGTGGCCCCCAGCAACGTCCTGTCGATGGCCCAGCTGCGCACGCTGCCCCTGGCCGAT
CAGATCAAGATCCTGATGAAGAATGTGAAGGTCATGCCTTTTGCCAACTTGATGAGCCTCCTGGGCCCCT
CCATCGATTCCGTGGCTGTTCTGCGGGGCATCCAGAAGGTGGCGATGTTGGTCCAAGGGAACTGGGTGGT
GAAGAGTGACATCCTATACCCCAAGGACTCGTCCAGCCCTCACAGCGGCGTGCCTGCTGAGGTGCTCTGC
AGGGGCCGAGACTTCGTTATGTGGAAGTTCACGCAGAGCCGCTGGGTGGTTAGGAAAGAGGTGGCAACCG
TGACCAAACTCTGCGCCGAGGATGTGAAGGACTTCCTGGAGCACATGGCCGTGGTGAGGATCAACAAAGG
CTGGGAGTTCATTCTGCCTTATGATGGGGAGTTCATCAAGAAGCACCCGGATGTGGTCCAGCGGCAGCAC
ATGCTGTGGACGGGTATCCAGGCCAAACTGGAAAAAGTCTATAATCTTGTAAAGGAAACCATGCCAAAGA
AGCCGGATGCACAATCAGGGCCTGCCGGGCTGGTCTGTGGGGACCAGCGGATCCAAGTAGCCAAAACCAA
GGCCCAGCAGAACCACGCGTTGCTGGAGCGGGAGCTGCAGCGGCGGAAGGAGCAGCTGCGGGTGCCTGCG
GTCCCGCCCGGTGTGCGGATCAAGGAGGAGCCCGTGAGCGAGGAGGGCGAGGAGGACGAGGAGCAGGAGG
CGGAGGAGGAGCCCATGGACACTTCCCCCAGCGGCCTCCACAGCAAGCTGGCCAACGGGCTGCCTCTCGG
GCGGGCTGCGGGCACAGACAGCTTCAACGGGCACCCGCCCCAGGGCTGCGCCAGCACCCCTGTGGCTCGG
GAACTGAAGGCCTTCGTGGAGGCCACCTTTCAGAGACAGTTTGTGCTCACGCTGAGCGAACTCAAGCGCC
TCTTCAATCTGCACTTGGCCAGCCTGCCCCCCGGCCACACACTCTTCAGCGGCATCTCGGACCGCATGCT
ACAGGACACGGTGCTGGCCGCCGGTTGCAAGCAGATACTGGTGCCTTTTCCCCCCCAGACTGCTGCTTCC
CCGGATGAGCAGAAGGTGTTTGCCCTCTGGGAGTCTGGAGACATGAGTGATCAGCATCGACAGGTTTTGC
TTGAAATTTTTTCCAAAAATTACCGGGTACGCCGAAACATGATCCAGTCTCGGTTGACTCAAGAGTGTGG
AGAAGATCTCAGTAAACAGGAGGTGGATAAAGTACTAAAGGACTGCTGTGTAAGCTATGGTGGCATGTGG
TACCTTAAAGGGACAGTACAGTCTTGA

Translation (708 aa):
MANEEDDPVVQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQKVELEMAIDTLNPNYC
RSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYRQGELHLTPLHGILQLRPSFS
YLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHY
YGLRDSRSEHERQYLLCPGSSGVENTELVKSPSEYLMMLMPPSQEEEKDKPVAPSNVLSMAQLRTLPLAD
QIKILMKNVKVMPFANLMSLLGPSIDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVPAEVLC
RGRDFVMWKFTQSRWVVRKEVATVTKLCAEDVKDFLEHMAVVRINKGWEFILPYDGEFIKKHPDVVQRQH
MLWTGIQAKLEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQVAKTKAQQNHALLERELQRRKEQLRVPA
VPPGVRIKEEPVSEEGEEDEEQEAEEEPMDTSPSGLHSKLANGLPLGRAAGTDSFNGHPPQGCASTPVAR
ELKAFVEATFQRQFVLTLSELKRLFNLHLASLPPGHTLFSGISDRMLQDTVLAAGCKQILVPFPPQTAAS
PDEQKVFALWESGDMSDQHRQVLLEIFSKNYRVRRNMIQSRLTQECGEDLSKQEVDKVLKDCCVSYGGMW
YLKGTVQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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