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Report for CCDS10648.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10648.1 Public Homo sapiens 16 SLX1B 24 110 108 CCDS HistoryNCBI Gene:79008Re-query CCDS DB by CCDS ID:10648.1Re-query CCDS DB by GeneID:79008See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10648.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330181.10 ENSP00000328940.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000330181.10Link to Ensembl Protein Viewer:ENSP00000328940.5Re-query CCDS DB by Nucleotide ID:ENST00000330181Re-query CCDS DB by Protein ID:ENSP00000328940
Original member Current member NCBI NM_024044.5 NP_076949.1 Accepted alive Link to Nucleotide Sequence:NM_024044.5Link to Protein Sequence:NP_076949.1Re-query CCDS DB by Nucleotide ID:NM_024044Re-query CCDS DB by Protein ID:NP_076949Link to BLAST:NP_076949.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076949.1 275 Q9BQ83-1 275 100% 0 0

Chromosomal Locations for CCDS 10648.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 29454743 29454930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29455398 29455449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29455544 29455885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29457632 29457759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29457928 29458015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29458095 29458124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (828 nt):
ATGGGTCCCGCGGGGGTCGCGGCGAGGCCAGGGCGCTTTTTCGGCGTCTACCTGCTCTACTGCCTGAACC
CCCGGTACCGGGGCCGCGTCTACGTGGGGTTCACTGTCAACACTGCTCGTCGGGTCCAGCAGCACAATGG
GGGCCGCAAAAAAGGCGGGGCCTGGCGGACCAGCGGGCGAGGGCCCTGGGAGATGGTGCTCGTCGTGCAC
GGCTTCCCGTCCTCCGTGGCCGCCCTTCGGTTTGAGTGGGCTTGGCAGCACCCGCACGCCTCGCGCCGCC
TGGCGCACGTGGGGCCTCGCCTGCGAGGAGAGACAGCCTTCGCTTTCCACCTGCGCGTGCTGGCGCACAT
GCTGCGCGCACCGCCCTGGGCTCGCCTCCCGCTCACGCTGCGCTGGGTGCGCCCAGACCTCCGCCAGGAC
CTCTGCCTCCCGCCGCCGCCGCACGTGCCTCTGGCCTTCGGGCCTCCACCGCCCCAGGCCCCGGCCCCAA
GGCGCCGCGCAGGTCCCTTTGATGACGCGGAGCCTGAGCCAGACCAGGGGGATCCAGGGGCCTGCTGCTC
CCTGTGCGCCCAGACCATCCAGGATGAAGAGGGGCCCTTGTGTTGCCCCCACCCTGGCTGCCTGCTAAGG
GCCCATGTGATCTGCCTGGCAGAGGAGTTTCTTCAGGAAGAACCAGGGCAGCTTCTGCCCCTAGAGGGCC
AATGCCCTTGCTGTGAGAAGTCACTGCTTTGGGGAGACCTGATCTGGCTGTGCCAGATGGACACTGAGAA
AGAAGTAGAAGACTCAGAATTAGAAGAGGCACACTGGACAGACCTGCTGGAGACCTGA

Translation (275 aa):
MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGRGPWEMVLVVH
GFPSSVAALRFEWAWQHPHASRRLAHVGPRLRGETAFAFHLRVLAHMLRAPPWARLPLTLRWVRPDLRQD
LCLPPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEPEPDQGDPGACCSLCAQTIQDEEGPLCCPHPGCLLR
AHVICLAEEFLQEEPGQLLPLEGQCPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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