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Report for CCDS10679.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10679.1 Public Homo sapiens 16 ZNF48 24 110 108 CCDS HistoryNCBI Gene:197407Re-query CCDS DB by CCDS ID:10679.1Re-query CCDS DB by GeneID:197407See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10679.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000320159.2 ENSP00000324056.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000320159.2Link to Ensembl Protein Viewer:ENSP00000324056.2Re-query CCDS DB by Nucleotide ID:ENST00000320159Re-query CCDS DB by Protein ID:ENSP00000324056
Original member Current member EBI ENST00000613509.2 ENSP00000480262.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000613509.2Link to Ensembl Protein Viewer:ENSP00000480262.1Re-query CCDS DB by Nucleotide ID:ENST00000613509Re-query CCDS DB by Protein ID:ENSP00000480262
Original member Current member NCBI NM_001214906.1 NP_001201835.1 Accepted alive Link to Nucleotide Sequence:NM_001214906.1Link to Protein Sequence:NP_001201835.1Re-query CCDS DB by Nucleotide ID:NM_001214906Re-query CCDS DB by Protein ID:NP_001201835Link to BLAST:NP_001201835.1
Original member Current member NCBI NM_001214909.2 NP_001201838.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001214909.2Link to Protein Sequence:NP_001201838.1Re-query CCDS DB by Nucleotide ID:NM_001214909Re-query CCDS DB by Protein ID:NP_001201838Link to BLAST:NP_001201838.1
Original member Current member NCBI NM_152652.3 NP_689865.2 Accepted alive Link to Nucleotide Sequence:NM_152652.3Link to Protein Sequence:NP_689865.2Re-query CCDS DB by Nucleotide ID:NM_152652Re-query CCDS DB by Protein ID:NP_689865Link to BLAST:NP_689865.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001201835.1 618 Q96MX3 618 100% 0 0
NP_001201838.1 618 Q96MX3 618 100% 0 0
NP_689865.2 618 Q96MX3 618 100% 0 0

Chromosomal Locations for CCDS 10679.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 30395795 30395873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30397330 30399107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1857 nt):
ATGGAGCGCGCGGTAGAGCCTTGGGGCCCAGATCTCCACCGCCCGGAGGAGAGGGAGCCACAGAGAGGCG
CCCGCACAGGTCTAGGGAGTGAGAACGTGATTTCTCAGCCGAATGAGTTTGAACATACCCCACAGGAAGA
TGACTTGGGGTTCAAGGAAGAAGATTTGGCTCCAGATCATGAAGTAGGAAATGCCTCTCTCAAACCTGAA
GGCATCCAGAACTGGGATGACTTATGGGTCCAGAGAGAGGGTCTAGGAAAGCCTCAGCCTCGGGACAGAG
GCCCCCGGCTCCTGGGTGAACCACGCTGGGGCCAGGCTAGTAGTGATCGGGCCGCTGTGTGTGGTGAGTG
TGGCAAAAGCTTCAGGCAGATGTCAGATCTGGTGAAACACCAGCGGACCCACACAGGGGAGAAACCCTAC
AAGTGTGGGGTCTGTGGCAAGGGCTTTGGGGATAGCTCTGCCCGGATCAAACACCAGCGGACTCATAGTG
GGGAGAAGCCCTATAGAGCCCGGCCACCAGCCCAGGGTCCCCCAAAGATTCCTCGGTCCCGGATCCCTGC
TGGTGAGCGCCCCACTATCTGTGGTGAATGTGGCAAGAGCTTCCGGCAGAGTTCTGACCTGGTGAAACAC
CAGCGGACACACACTGGTGAGAAGCCCTACAAGTGTGGCATATGTGGCAAGGGCTTTGGCGACAGTTCCG
CCCGCATCAAGCACCAGCGGACACACCGGGGGGAGCAGCCCCCCCGACCAGTGGTGCCCCGACGGCAGCC
ATCTCGGGCAGCCACGGCAGCTACCCAGGGACCGAAGGCCCAGGACAAGCCATATATCTGCACTGATTGC
GGCAAGAGGTTTGTGCTCAGCTGCAGCCTCCTGAGTCACCAGCGTAGTCACTTGGGGCCCAAGCCCTTTG
GCTGTGATGTGTGTGGAAAGGAGTTTGCCCGGGGATCCGACCTGGTGAAGCACCTGCGGGTGCACACGGG
TGAGAAGCCCTACCTCTGCCCAGAGTGCGGCAAAGGTTTCGCGGACAGCTCCGCCCGAGTCAAACACCTC
CGCACCCACAGTGGCGAGAGGCCCCATGCCTGCCCGGAATGCGACCGTACCTTCAGCCTCAGCTCCACCC
TTCTTCGCCACCGCCTCACTCACATGGAGCCCCAGGACTTCAGCTTCCCAGGCTATCCCCTACCCGCTCT
GATCCCCAGCCCACCCCCACCTCCTCTGGGCACCAGCCCCCCGCTGACACCTCGAAGTCCCTCACACTCG
GGTGAGCCTTTTGGCCTGCCTGGCTTGGAGCCAGAGCCTGGGGGCCCACAGGCTGGGGAGCCACCCCCAC
CACTGGCGGGCGACAAGCCCCACAAGTGCCCTGAGTGTGGCAAGGGCTTCCGCCGAAGCTCTGACCTGGT
GAAACACCATCGTGTGCACACAGGGGAGAAACCCTACCTCTGTCCTGAATGCGGCAAGGGTTTTGCTGAC
AGCTCAGCCCGAGTCAAGCACCTCCGCACCCACCGTGGTGAACGGGCCCGGCCACCACCACCATCCACTC
TGCTGCGGCCACATAACCCACCTGGCCCAGTACCCATGGCCCCTCGACCCCGAGTTCGGGCCCAGCCTTC
TGGACCCAGCCAGCCCCACGTGTGTGGCTTCTGTGGGAAGGAGTTCCCCCGGAGCTCAGATCTGGTCAAA
CACAGGCGTACACACACGGGGGAGAAGCCATACAAGTGTGCAGAGTGTGGCAAGGGTTTTGGTGACAGTT
CTGCCCGCATCAAGCACCAGCGTGGGCACCTGGTCCTGACGCCCTTTGGGATAGGGGATGGTAGGGCAAG
GCCCCTCAAGCAGGAGGCAGCAACAGGACTGGAATGA

Translation (618 aa):
MERAVEPWGPDLHRPEEREPQRGARTGLGSENVISQPNEFEHTPQEDDLGFKEEDLAPDHEVGNASLKPE
GIQNWDDLWVQREGLGKPQPRDRGPRLLGEPRWGQASSDRAAVCGECGKSFRQMSDLVKHQRTHTGEKPY
KCGVCGKGFGDSSARIKHQRTHSGEKPYRARPPAQGPPKIPRSRIPAGERPTICGECGKSFRQSSDLVKH
QRTHTGEKPYKCGICGKGFGDSSARIKHQRTHRGEQPPRPVVPRRQPSRAATAATQGPKAQDKPYICTDC
GKRFVLSCSLLSHQRSHLGPKPFGCDVCGKEFARGSDLVKHLRVHTGEKPYLCPECGKGFADSSARVKHL
RTHSGERPHACPECDRTFSLSSTLLRHRLTHMEPQDFSFPGYPLPALIPSPPPPPLGTSPPLTPRSPSHS
GEPFGLPGLEPEPGGPQAGEPPPPLAGDKPHKCPECGKGFRRSSDLVKHHRVHTGEKPYLCPECGKGFAD
SSARVKHLRTHRGERARPPPPSTLLRPHNPPGPVPMAPRPRVRAQPSGPSQPHVCGFCGKEFPRSSDLVK
HRRTHTGEKPYKCAECGKGFGDSSARIKHQRGHLVLTPFGIGDGRARPLKQEAATGLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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