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Report for CCDS1074.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1074.1 Public Homo sapiens 1 PBXIP1 24 110 108 CCDS HistoryNCBI Gene:57326Re-query CCDS DB by CCDS ID:1074.1Re-query CCDS DB by GeneID:57326See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1074.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368463.8 ENSP00000357448.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368463.8Link to Ensembl Protein Viewer:ENSP00000357448.3Re-query CCDS DB by Nucleotide ID:ENST00000368463Re-query CCDS DB by Protein ID:ENSP00000357448
Original member Current member NCBI NM_020524.4 NP_065385.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020524.4Link to Protein Sequence:NP_065385.2Re-query CCDS DB by Nucleotide ID:NM_020524Re-query CCDS DB by Protein ID:NP_065385Link to BLAST:NP_065385.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065385.2 731 Q96AQ6-1 731 100% 0 0

Chromosomal Locations for CCDS 1074.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 154945024 154945117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154945572 154946803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154947417 154947548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154947642 154947712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154947982 154948005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154948133 154948366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154951232 154951397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154951471 154951535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154951795 154951921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154953671 154953721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2196 nt):
ATGGCCTCCTGCCCAGACTCTGATAATAGCTGGGTGCTTGCTGGCTCCGAGAGCCTGCCAGTGGAGACAC
TGGGCCCGGCATCCAGGATGGACCCAGAATCTGAGAGAGCCCTGCAGGCCCCTCACAGCCCCTCCAAGAC
AGATGGGAAAGAATTAGCTGGGACCATGGATGGAGAAGGGACGCTCTTCCAGACTGAAAGCCCTCAGTCT
GGCAGCATTCTAACAGAGGAGACTGAGGTCAAGGGCACCCTGGAAGGTGATGTTTGTGGTGTGGAGCCTC
CTGGCCCAGGAGACACAGTAGTCCAGGGAGACCTGCAGGAGACCACCGTGGTGACAGGCCTGGGACCAGA
CACACAGGACCTGGAAGGCCAGAGCCCTCCACAGAGCCTGCCTTCAACCCCCAAAGCAGCTTGGATCAGG
GAGGAGGGCCGCTGCTCCAGCAGTGACGATGACACCGACGTGGACATGGAGGGTCTGCGGAGACGGCGGG
GCCGGGAGGCCGGCCCACCTCAGCCCATGGTGCCCCTGGCTGTGGAGAACCAGGCTGGGGGTGAGGGTGC
AGGCGGGGAGCTGGGCATCTCCCTCAACATGTGCCTCCTTGGGGCCCTGGTTCTGCTTGGCCTGGGGGTC
CTCCTCTTCTCAGGTGGCCTCTCAGAGTCTGAGACTGGGCCCATGGAGGAAGTGGAGCGGCAGGTCCTCC
CAGACCCCGAGGTGCTGGAAGCTGTGGGGGACAGGCAGGATGGGCTAAGGGAACAGCTGCAGGCCCCAGT
GCCTCCTGACAGTGTCCCCAGCCTGCAAAACATGGGTCTTCTGCTGGACAAGCTGGCCAAGGAGAACCAG
GACATCCGGCTGCTGCAGGCCCAGCTGCAGGCCCAAAAGGAAGAGCTTCAGAGCCTGATGCACCAGCCCA
AAGGGCTAGAGGAGGAGAATGCCCAGCTCCGGGGGGCTCTGCAGCAGGGCGAAGCCTTCCAGCGGGCTCT
GGAGTCAGAGCTGCAGCAGCTGCGGGCCCGGCTCCAGGGGCTGGAGGCCGACTGTGTCCGGGGCCCAGAT
GGGGTGTGCCTCAGTGGGGGTAGAGGCCCACAGGGTGACAAGGCCATCAGGGAGCAAGGCCCCAGGGAGC
AGGAGCCAGAACTCAGCTTCCTGAAGCAGAAGGAACAGCTGGAGGCTGAGGCACAGGCATTAAGGCAAGA
GTTAGAGAGGCAGCGACGGCTGCTGGGGTCTGTACAGCAGGATCTGGAGAGGAGCTTGCAGGATGCCAGC
CGCGGGGACCCAGCTCATGCTGGCTTGGCTGAGCTGGGCCACAGATTGGCCCAGAAACTGCAGGGCCTGG
AGAACTGGGGCCAGGACCCTGGGGTCTCTGCCAATGCCTCAAAGGCCTGGCACCAGAAGTCCCACTTCCA
GAATTCTAGGGAGTGGAGTGGAAAGGAAAAGTGGTGGGATGGGCAGAGAGACCGGAAGGCTGAGCACTGG
AAACATAAGAAGGAAGAATCTGGCCGGGAAAGGAAGAAGAACTGGGGAGGTCAGGAGGACAGGGAGCCAG
CAGGAAGGTGGAAGGAGGGCAGGCCAAGGGTGGAGGAGTCGGGGAGCAAGAAGGAGGGCAAGCGACAGGG
CCCGAAGGAACCCCCAAGGAAAAGTGGTAGCTTCCACTCCTCTGGAGAAAAGCAGAAGCAACCTCGGTGG
AGGGAAGGGACTAAGGACAGCCATGACCCCCTGCCATCCTGGGCAGAGCTGTTGAGGCCCAAGTACCGGG
CACCCCAGGGCTGCTCAGGTGTGGACGAGTGTGCCCGGCAGGAGGGCCTGACTTTCTTTGGCACAGAGCT
AGCCCCAGTGCGGCAACAGGAGCTGGCCTCTCTGCTAAGAACATACTTGGCACGGCTGCCCTGGGCTGGG
CAGCTGACCAAGGAGCTACCCCTCTCACCTGCTTTCTTTGGTGAGGATGGCATCTTCCGTCATGACCGCC
TCCGCTTCCGGGATTTTGTGGATGCCCTGGAGGACAGCTTGGAGGAGGTGGCTGTGCAACAGACAGGTGA
TGATGATGAAGTAGATGACTTTGAGGACTTCATCTTCAGCCACTTCTTTGGAGACAAAGCACTGAAGAAG
AGGTCAGGGAAGAAGGACAAGCACTCACAGAGCCCAAGAGCTGCGGGGCCCAGGGAGGGGCACAGCCATA
GCCACCACCACCACCACCGGGGCTGA

Translation (731 aa):
MASCPDSDNSWVLAGSESLPVETLGPASRMDPESERALQAPHSPSKTDGKELAGTMDGEGTLFQTESPQS
GSILTEETEVKGTLEGDVCGVEPPGPGDTVVQGDLQETTVVTGLGPDTQDLEGQSPPQSLPSTPKAAWIR
EEGRCSSSDDDTDVDMEGLRRRRGREAGPPQPMVPLAVENQAGGEGAGGELGISLNMCLLGALVLLGLGV
LLFSGGLSESETGPMEEVERQVLPDPEVLEAVGDRQDGLREQLQAPVPPDSVPSLQNMGLLLDKLAKENQ
DIRLLQAQLQAQKEELQSLMHQPKGLEEENAQLRGALQQGEAFQRALESELQQLRARLQGLEADCVRGPD
GVCLSGGRGPQGDKAIREQGPREQEPELSFLKQKEQLEAEAQALRQELERQRRLLGSVQQDLERSLQDAS
RGDPAHAGLAELGHRLAQKLQGLENWGQDPGVSANASKAWHQKSHFQNSREWSGKEKWWDGQRDRKAEHW
KHKKEESGRERKKNWGGQEDREPAGRWKEGRPRVEESGSKKEGKRQGPKEPPRKSGSFHSSGEKQKQPRW
REGTKDSHDPLPSWAELLRPKYRAPQGCSGVDECARQEGLTFFGTELAPVRQQELASLLRTYLARLPWAG
QLTKELPLSPAFFGEDGIFRHDRLRFRDFVDALEDSLEEVAVQQTGDDDEVDDFEDFIFSHFFGDKALKK
RSGKKDKHSQSPRAAGPREGHSHSHHHHHRG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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