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Report for CCDS10924.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10924.2 Public Homo sapiens 16 CNTNAP4 24 110 108 CCDS HistoryNCBI Gene:85445Re-query CCDS DB by CCDS ID:10924.2Re-query CCDS DB by GeneID:85445See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 10924.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000478060.5 ENSP00000418741.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000478060.5Link to Ensembl Protein Viewer:ENSP00000418741.1Re-query CCDS DB by Nucleotide ID:ENST00000478060Re-query CCDS DB by Protein ID:ENSP00000418741
Original member Current member NCBI NM_138994.5 NP_620481.2 Accepted alive Link to Nucleotide Sequence:NM_138994.5Link to Protein Sequence:NP_620481.2Re-query CCDS DB by Nucleotide ID:NM_138994Re-query CCDS DB by Protein ID:NP_620481Link to BLAST:NP_620481.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620481.2 1235 Q9C0A0-2 1235 100% 0 0

Chromosomal Locations for CCDS 10924.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 76309897 76309906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 76316413 76316523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 76355318 76355511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 76427452 76427599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 76448012 76448215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 76448767 76448951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 76452508 76452769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 76461956 76462105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 76467352 76467523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 76475939 76476045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 76479419 76479538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 76489686 76489883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 76494910 76495066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 76498567 76498694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 76521140 76521310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 76522039 76522257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 76535545 76535784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 76538116 76538340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 76539719 76539852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 76540703 76540790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 76553283 76553501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 76553836 76553907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 76558490 76558683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3708 nt):
ATGTGGAACTATGACTGTGATGATCCTCTTGTGTCTGCCTTGCCTCAGGCATCCTTCAGCAGTTCTTCCG
AGCTCTCCAGCAGTCATGGTCCTGGATTTGCAAGGCTGAATAGAAGAGATGGAGCTGGTGGCTGGTCTCC
ACTTGTGTCTAACAAATACCAGTGGTTGCAGATTGACCTTGGAGAGAGAATGGAGGTCACCGCTGTGGCC
ACTCAAGGGGGATATGGTAGCTCCAACTGGGTGACCAGCTACCTCCTGATGTTCAGTGATAGTGGCTGGA
ACTGGAAACAATATCGCCAAGAGGACAGCATCTGGGGTTTTTCAGGAAATGCAAATGCAGACAGTGTTGT
GTACTATAGACTCCAGCCTTCTATCAAAGCCAGATTTCTGCGCTTCATCCCTTTGGAATGGAACCCCAAG
GGCAGAATTGGAATGCGAATCGAAGTGTTCGGATGTGCATACAGATCAGAAGTGGTTGATCTTGATGGAA
AAAGTTCCCTTCTCTACAGATTTGATCAAAAATCCCTGAGCCCAATAAAAGACATTATTTCTTTGAAATT
CAAAACCATGCAGAGTGATGGGATTCTACTCCACAGGGAAGGGCCAAATGGAGATCACATCACACTGCAA
TTAAGAAGAGCAAGACTCTTTTTACTTATTAATTCAGGTGAAGCTAAACTGCCTTCCACTTCCACCCTGG
TCAATCTCACCCTGGGCAGCCTGCTAGATGATCAGCATTGGCATTCAGTGCTCATCCAGCGTTTGGGCAA
ACAAGTCAACTTCACAGTGGACGAACACAGGCATCATTTCCATGCACGGGGAGAATTCAATCTCATGAAT
CTTGATTATGAGGGAAATGTGTCATTTTCTTGTTCACAACCACAATCTATGCCCGTGACTTTTCTGAGCT
CCAGGAGTTATTTAGCACTGCCAGACTTCTCTGGAGAGGAGGAGGTTTCTGCCACTTTTCAATTTCGAAC
TTGGAATAAGGCAGGGCTTCTGCTGTTCAGTGAACTTCAGCTGATTTCAGGGGGTATCCTCCTCTTTCTG
AGTGATGGAAAACTTAAGTCGAATCTCTACCAGCCAGGAAAATTACCCAGTGACATCACAGCAGGTGTCG
AATTAAATGATGGGCAGTGGCATTCTGTCTCTTTATCTGCTAAAAAGAATCACTTGAGTGTGGCGGTGGA
CGGCCAGATGGCTTCTGCTGCTCCTCTGCTGGGGCCTGAGCAGATTTATTCGGGTGGCACCTATTATTTT
GGAGGTTGTCCTGACAAAAGCTTTGGATCCAAATGTAAAAGTCCACTTGGTGGATTTCAGGGATGTATGA
GGCTCATTTCTATCAGCGGCAAAGTGGTAGATCTGATTTCAGTTCAGCAGGGGTCCCTTGGGAACTTCAG
TGACCTTCAGATAGACTCATGTGGCATCTCAGACAGGTGTTTGCCCAACTATTGTGAACACGGTGGGGAG
TGTTCCCAGTCCTGGAGCACCTTTCATTGTAACTGTACCAACACTGGTTACAGAGGAGCTACTTGCCATA
ACTCTATCTATGAGCAGTCATGTGAAGCCTATAAGCACAGAGGAAATACTTCAGGGTTTTACTATATAGA
TTCAGATGGAAGTGGTCCCCTGGAACCATTTCTTCTATATTGCAATATGACCGAAACTGCATGGACCATC
ATACAGCACAACGGCTCTGACTTAACAAGAGTCAGAAATACTAATCCAGAGAACCCATATGCTGGGTTTT
TCGAGTATGTGGCCAGCATGGAGCAACTTCAGGCCACTATTAACCGTGCAGAGCACTGTGAACAGGAGTT
TACTTATTACTGCAAGAAGTCACGGCTGGTCAATAAGCAAGATGGAACCCCTCTGAGTTGGTGGGTAGGA
AGAACCAATGAAACGCAAACCTACTGGGGAGGTTCTTCGCCTGATCTTCAAAAATGTACTTGTGGATTAG
AGGGAAACTGCATTGATTCTCAGTATTACTGCAATTGTGATGCTGACCGGAATGAATGGACCAATGACAC
TGGATTGCTTGCTTATAAAGAACATCTTCCAGTAACTAAGATCGTGATTACAGACACAGGCCGACTGCAT
TCAGAAGCAGCTTATAAACTGGGGCCTCTGCTCTGCCAGGGAGACAGATCATTTTGGAATTCAGCTTCCT
TTGATACCGAGGCTTCATATCTTCATTTTCCTACCTTCCACGGAGAACTTAGCGCGGATGTATCTTTCTT
TTTTAAGACAACAGCTTCATCTGGGGTATTTTTAGAGAACTTGGGGATTGCTGATTTTATACGGATAGAG
CTTCGCTCTCCGACAGTAGTGACTTTTTCATTTGATGTGGGGAATGGGCCTTTTGAAATCTCAGTGCAGT
CACCCACCCACTTCAACGACAACCAGTGGCACCATGTGAGGGTTGAAAGGAACATGAAGGAGGCCTCCCT
TCAAGTGGATCAGCTGACACCAAAGACACAGCCCGCCCCCGCTGATGGGCATGTCCTGTTACAGCTCAAC
AGTCAGCTCTTCGTGGGTGGAACGGCCACCAGACAGAGAGGCTTTCTGGGCTGCATTCGGTCTCTGCAGT
TGAATGGGATGACCCTGGATTTGGAAGAAAGAGCCCAGGTGACTCCAGAAGTGCAGCCAGGTTGTAGGGG
ACATTGCAGCAGCTATGGGAAGTTATGCCGCAATGGAGGGAAATGCAGAGAAAGACCCATTGGGTTCTTT
TGTGACTGCACTTTCTCTGCATACACAGGGCCATTCTGCTCAAATGAGATTTCTGCATATTTTGGATCTG
GCTCATCCGTGATATACAATTTTCAAGAAAATTATCTTTTAAGTAAAAACTCCAGCTCCCACGCTGCTTC
ATTTCATGGTGATATGAAGCTGAGCAGAGAAATGATCAAATTTAGTTTCCGAACAACACGAACACCAAGC
TTGCTGCTTTTTGTGAGCTCCTTTTACAAAGAATACCTTTCTGTGATCATTGCCAAAAATGGAAGTTTGC
AGATCAGGTACAAGTTAAATAAATATCAAGAGCCTGATGTTGTTAACTTTGATTTTAAAAACATGGCTGA
TGGACAACTTCACCACATAATGATTAACAGAGAAGAAGGAGTGGTCTTTATAGAGATTGACGATAATAGA
AGGAGACAAGTTCACCTGTCATCAGGCACAGAATTCAGTGCAGTCAAATCTCTGGTATTGGGCAGGATTT
TAGAACACAGTGATGTGGACCAGGATACTGCACTGGCAGGTGCGCAGGGCTTCACAGGCTGCCTCTCTGC
AGTGCAGCTCAGCCACGTGGCCCCTCTGAAGGCAGCTCTGCACCCCAGCCACCCAGACCCTGTCACTGTT
ACAGGACACGTGACTGAGTCCAGCTGTATGGCCCAGCCTGGCACTGATGCCACATCAAGGGAAAGGACAC
ACTCGTTTGCAGATCATTCTGGAACAATAGATGACAGAGAGCCCCTTGCTAATGCAATCAAAAGTGACTC
TGCAGTAATTGGAGGTCTGATAGCTGTTGTGATTTTTATCTTGCTTTGCATCACTGCCATAGCTGTTCGC
ATTTATCAGCAGAAAAGGTTATATAAAAGAAGTGAGGCAAAAAGGTCAGAGAATGTAGACAGTGCTGAGG
CTGTTCTGAAAAGTGAGCTTAATATACAAAATGCAGTCAATGAAAATCAGAAAGAGTACTTCTTCTGA

Translation (1235 aa):
MWNYDCDDPLVSALPQASFSSSSELSSSHGPGFARLNRRDGAGGWSPLVSNKYQWLQIDLGERMEVTAVA
TQGGYGSSNWVTSYLLMFSDSGWNWKQYRQEDSIWGFSGNANADSVVYYRLQPSIKARFLRFIPLEWNPK
GRIGMRIEVFGCAYRSEVVDLDGKSSLLYRFDQKSLSPIKDIISLKFKTMQSDGILLHREGPNGDHITLQ
LRRARLFLLINSGEAKLPSTSTLVNLTLGSLLDDQHWHSVLIQRLGKQVNFTVDEHRHHFHARGEFNLMN
LDYEGNVSFSCSQPQSMPVTFLSSRSYLALPDFSGEEEVSATFQFRTWNKAGLLLFSELQLISGGILLFL
SDGKLKSNLYQPGKLPSDITAGVELNDGQWHSVSLSAKKNHLSVAVDGQMASAAPLLGPEQIYSGGTYYF
GGCPDKSFGSKCKSPLGGFQGCMRLISISGKVVDLISVQQGSLGNFSDLQIDSCGISDRCLPNYCEHGGE
CSQSWSTFHCNCTNTGYRGATCHNSIYEQSCEAYKHRGNTSGFYYIDSDGSGPLEPFLLYCNMTETAWTI
IQHNGSDLTRVRNTNPENPYAGFFEYVASMEQLQATINRAEHCEQEFTYYCKKSRLVNKQDGTPLSWWVG
RTNETQTYWGGSSPDLQKCTCGLEGNCIDSQYYCNCDADRNEWTNDTGLLAYKEHLPVTKIVITDTGRLH
SEAAYKLGPLLCQGDRSFWNSASFDTEASYLHFPTFHGELSADVSFFFKTTASSGVFLENLGIADFIRIE
LRSPTVVTFSFDVGNGPFEISVQSPTHFNDNQWHHVRVERNMKEASLQVDQLTPKTQPAPADGHVLLQLN
SQLFVGGTATRQRGFLGCIRSLQLNGMTLDLEERAQVTPEVQPGCRGHCSSYGKLCRNGGKCRERPIGFF
CDCTFSAYTGPFCSNEISAYFGSGSSVIYNFQENYLLSKNSSSHAASFHGDMKLSREMIKFSFRTTRTPS
LLLFVSSFYKEYLSVIIAKNGSLQIRYKLNKYQEPDVVNFDFKNMADGQLHHIMINREEGVVFIEIDDNR
RRQVHLSSGTEFSAVKSLVLGRILEHSDVDQDTALAGAQGFTGCLSAVQLSHVAPLKAALHPSHPDPVTV
TGHVTESSCMAQPGTDATSRERTHSFADHSGTIDDREPLANAIKSDSAVIGGLIAVVIFILLCITAIAVR
IYQQKRLYKRSEAKRSENVDSAEAVLKSELNIQNAVNENQKEYFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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