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Report for CCDS11125.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11125.1 Public Homo sapiens 17 TRAPPC1 24 110 108 CCDS HistoryNCBI Gene:58485Re-query CCDS DB by CCDS ID:11125.1Re-query CCDS DB by GeneID:58485See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11125.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000303731.9 ENSP00000302783.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000303731.9Link to Ensembl Protein Viewer:ENSP00000302783.4Re-query CCDS DB by Nucleotide ID:ENST00000303731Re-query CCDS DB by Protein ID:ENSP00000302783
Original member Current member EBI ENST00000540486.5 ENSP00000441130.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540486.5Link to Ensembl Protein Viewer:ENSP00000441130.1Re-query CCDS DB by Nucleotide ID:ENST00000540486Re-query CCDS DB by Protein ID:ENSP00000441130
Original member Current member NCBI NM_001166621.1 NP_001160093.1 Accepted alive Link to Nucleotide Sequence:NM_001166621.1Link to Protein Sequence:NP_001160093.1Re-query CCDS DB by Nucleotide ID:NM_001166621Re-query CCDS DB by Protein ID:NP_001160093Link to BLAST:NP_001160093.1
Original member Current member NCBI NM_021210.5 NP_067033.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021210.5Link to Protein Sequence:NP_067033.1Re-query CCDS DB by Nucleotide ID:NM_021210Re-query CCDS DB by Protein ID:NP_067033Link to BLAST:NP_067033.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001160093.1 145 Q9Y5R8 145 100% 0 0
NP_067033.1 145 Q9Y5R8 145 100% 0 0

Chromosomal Locations for CCDS 11125.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 7930606 7930734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7931011 7931149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7931506 7931576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7931731 7931829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (438 nt):
ATGACTGTCCACAACCTGTACCTGTTTGACCGGAATGGAGTGTGTCTGCACTACAGCGAATGGCACCGCA
AGAAGCAAGCAGGGATTCCCAAGGAGGAGGAGTATAAGCTGATGTACGGGATGCTCTTCTCTATCCGCTC
GTTTGTCAGCAAGATGTCCCCGCTAGACATGAAGGATGGCTTCCTGGCCTTCCAAACTAGCCGTTACAAA
CTCCATTACTACGAGACGCCCACTGGGATCAAAGTTGTCATGAATACTGACTTGGGCGTGGGACCCATCC
GAGATGTGCTGCACCACATCTACAGTGCGCTGTATGTGGAGCTGGTGGTGAAGAATCCCCTGTGCCCGCT
GGGCCAAACTGTGCAAAGTGAGCTCTTTCGCTCCCGACTGGACTCCTATGTTCGCTCTCTGCCCTTCTTC
TCCGCCCGGGCTGGCTGA

Translation (145 aa):
MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLAFQTSRYK
LHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQTVQSELFRSRLDSYVRSLPFF
SARAG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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