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Report for CCDS1152.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1152.1 Public Homo sapiens 1 CRABP2 24 110 108 CCDS HistoryNCBI Gene:1382Re-query CCDS DB by CCDS ID:1152.1Re-query CCDS DB by GeneID:1382See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1152.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368221.1 ENSP00000357204.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368221.1Link to Ensembl Protein Viewer:ENSP00000357204.1Re-query CCDS DB by Nucleotide ID:ENST00000368221Re-query CCDS DB by Protein ID:ENSP00000357204
Original member Current member EBI ENST00000368222.8 ENSP00000357205.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368222.8Link to Ensembl Protein Viewer:ENSP00000357205.3Re-query CCDS DB by Nucleotide ID:ENST00000368222Re-query CCDS DB by Protein ID:ENSP00000357205
Original member Current member EBI ENST00000621784.4 ENSP00000482841.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000621784.4Link to Ensembl Protein Viewer:ENSP00000482841.1Re-query CCDS DB by Nucleotide ID:ENST00000621784Re-query CCDS DB by Protein ID:ENSP00000482841
Original member Current member NCBI NM_001199723.2 NP_001186652.1 Accepted alive Link to Nucleotide Sequence:NM_001199723.2Link to Protein Sequence:NP_001186652.1Re-query CCDS DB by Nucleotide ID:NM_001199723Re-query CCDS DB by Protein ID:NP_001186652Link to BLAST:NP_001186652.1
Original member Current member NCBI NM_001878.4 NP_001869.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001878.4Link to Protein Sequence:NP_001869.1Re-query CCDS DB by Nucleotide ID:NM_001878Re-query CCDS DB by Protein ID:NP_001869Link to BLAST:NP_001869.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186652.1 138 P29373 138 100% 0 0
NP_001869.1 138 P29373 138 100% 0 0

Chromosomal Locations for CCDS 1152.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 156700026 156700076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156700542 156700658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156700874 156701052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156705377 156705446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (417 nt):
ATGCCCAACTTCTCTGGCAACTGGAAAATCATCCGATCGGAAAACTTCGAGGAATTGCTCAAAGTGCTGG
GGGTGAATGTGATGCTGAGGAAGATTGCTGTGGCTGCAGCGTCCAAGCCAGCAGTGGAGATCAAACAGGA
GGGAGACACTTTCTACATCAAAACCTCCACCACCGTGCGCACCACAGAGATTAACTTCAAGGTTGGGGAG
GAGTTTGAGGAGCAGACTGTGGATGGGAGGCCCTGTAAGAGCCTGGTGAAATGGGAGAGTGAGAATAAAA
TGGTCTGTGAGCAGAAGCTCCTGAAGGGAGAGGGCCCCAAGACCTCGTGGACCAGAGAACTGACCAACGA
TGGGGAACTGATCCTGACCATGACGGCGGATGACGTTGTGTGCACCAGGGTCTACGTCCGAGAGTGA

Translation (138 aa):
MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVRTTEINFKVGE
EFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGELILTMTADDVVCTRVYVRE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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