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Report for CCDS11640.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11640.1 Public Homo sapiens 17 TACO1 24 110 108 CCDS HistoryNCBI Gene:51204Re-query CCDS DB by CCDS ID:11640.1Re-query CCDS DB by GeneID:51204See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11640.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000258975.7 ENSP00000258975.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000258975.7Link to Ensembl Protein Viewer:ENSP00000258975.6Re-query CCDS DB by Nucleotide ID:ENST00000258975Re-query CCDS DB by Protein ID:ENSP00000258975
Original member Current member NCBI NM_016360.4 NP_057444.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016360.4Link to Protein Sequence:NP_057444.2Re-query CCDS DB by Nucleotide ID:NM_016360Re-query CCDS DB by Protein ID:NP_057444Link to BLAST:NP_057444.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057444.2 297 Q9BSH4 297 100% 0 0

Chromosomal Locations for CCDS 11640.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 63601084 63601363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63604534 63604640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63606313 63606440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63607287 63607464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63607802 63608002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGTCGGCTTGGGCTGCTGCCAGCCTAAGCAGGGCCGCTGCCCGATGCTTGCTGGCACGAGGCCCCGGGG
TCAGGGCGGCTCCTCCGCGCGACCCCCGGCCCTCCCACCCCGAGCCCCGGGGCTGCGGTGCCGCTCCGGG
CAGGACGCTGCACTTTACCGCGGCTGTCCCCGCCGGGCACAACAAGTGGTCCAAAGTCAGGCACATCAAG
GGTCCGAAGGACGTCGAAAGGAGTCGCATCTTCTCCAAACTCTGTTTGAACATCCGCCTGGCAGTGAAAG
AAGGAGGCCCCAACCCTGAGCACAACAGCAACCTGGCCAATATCTTAGAGGTGTGTCGCAGCAAACATAT
GCCCAAGTCAACGATTGAGACAGCACTGAAAATGGAGAAATCCAAGGACACTTATTTGCTGTATGAGGGT
CGAGGCCCTGGTGGCTCTTCTCTGCTCATCGAGGCATTATCTAACAGTAGCCACAAGTGCCAAGCAGACA
TTAGACATATCCTGAATAAGAATGGAGGAGTGATGGCTGTAGGAGCTCGTCACTCTTTTGACAAAAAGGG
GGTGATTGTGGTTGAAGTGGAGGACAGAGAGAAGAAGGCTGTGAACCTAGAGCGTGCCCTGGAGATGGCA
ATCGAAGCAGGAGCTGAGGATGTCAAGGAAACTGAAGATGAAGAAGAAAGGAACGTTTTTAAATTTATTT
GTGATGCCTCTTCACTGCACCAAGTGAGGAAGAAGCTGGACTCCCTGGGCCTGTGTTCTGTGTCCTGTGC
ACTAGAGTTCATCCCCAACTCAAAGGTGCAGCTGGCTGAGCCCGACCTGGAACAGGCCGCACATCTCATT
CAGGCTCTCAGCAACCACGAGGATGTGATTCACGTCTATGATAACATTGAATAA

Translation (297 aa):
MSAWAAASLSRAAARCLLARGPGVRAAPPRDPRPSHPEPRGCGAAPGRTLHFTAAVPAGHNKWSKVRHIK
GPKDVERSRIFSKLCLNIRLAVKEGGPNPEHNSNLANILEVCRSKHMPKSTIETALKMEKSKDTYLLYEG
RGPGGSSLLIEALSNSSHKCQADIRHILNKNGGVMAVGARHSFDKKGVIVVEVEDREKKAVNLERALEMA
IEAGAEDVKETEDEEERNVFKFICDASSLHQVRKKLDSLGLCSVSCALEFIPNSKVQLAEPDLEQAAHLI
QALSNHEDVIHVYDNIE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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