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Report for CCDS11652.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11652.1 Public Homo sapiens 17 CSHL1 24 110 108 CCDS HistoryNCBI Gene:1444Re-query CCDS DB by CCDS ID:11652.1Re-query CCDS DB by GeneID:1444See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11652.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309894.6 ENSP00000309524.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000309894.6Link to Ensembl Protein Viewer:ENSP00000309524.5Re-query CCDS DB by Nucleotide ID:ENST00000309894Re-query CCDS DB by Protein ID:ENSP00000309524
Original member Current member NCBI NM_022579.3 NP_072101.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022579.3Link to Protein Sequence:NP_072101.1Re-query CCDS DB by Nucleotide ID:NM_022579Re-query CCDS DB by Protein ID:NP_072101Link to BLAST:NP_072101.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_072101.1 222 Q14406-1 222 100% 0 0

Chromosomal Locations for CCDS 11652.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 63909711 63909908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63910162 63910326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63910420 63910535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63910745 63910924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63911187 63911196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (669 nt):
ATGGCTGCAGGCTCCCGGACGTCCCTGCTCCTGGCTTTTGCCCTGCTCTGCCTGCCCTGGCTTCAAGAGG
CTGGTGCCGTCCAAACCGTTCCCTTATCCAGGCTTTTTAAAGAGGCTATGCTCCAAGCCCATCGCGCACA
CCAGCTGGCCATTGACACCTACCAGGAGTTTATAAGCTCTTGGGGAATGGAAGCCTATATCACAAAGGAA
CAGAAGTATTCATTCCTGCATGACTCCCAGACCTCCTTCTGCTTCTCAGACTCTATTCCGACATCCTCCA
ACATGGAGGAAACGCAGCAGAAATCCAACTTAGAGCTGCTCCACATCTCCCTGCTGCTCATCGAGTCGCG
GCTGGAGCCCGTGCGGTTCCTCAGGAGTACCTTCACCAACAACCTGGTGTATGACACCTCGGACAGCGAT
GACTATCACCTCCTAAAGGACCTAGAGGAAGGCATCCAAATGCTGATGGGGAGGCTGGAAGACGGCAGCC
ACCTGACTGGGCAGACCCTCAAGCAGACCTACAGCAAGTTTGACACAAACTCGCACAACCATGACGCACT
GCTCAAGAACTACGGGCTGCTCCACTGCTTCAGGAAGGACATGGACAAGGTCGAGACATTCCTGCGCATG
GTGCAGTGCCGCTCTGTGGAGGGCAGCTGTGGCTTCTAG

Translation (222 aa):
MAAGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFKEAMLQAHRAHQLAIDTYQEFISSWGMEAYITKE
QKYSFLHDSQTSFCFSDSIPTSSNMEETQQKSNLELLHISLLLIESRLEPVRFLRSTFTNNLVYDTSDSD
DYHLLKDLEEGIQMLMGRLEDGSHLTGQTLKQTYSKFDTNSHNHDALLKNYGLLHCFRKDMDKVETFLRM
VQCRSVEGSCGF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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