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Report for CCDS11693.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11693.2 Public Homo sapiens 17 VCF1 24 110 108 CCDS HistoryNCBI Gene:84923Re-query CCDS DB by CCDS ID:11693.2Re-query CCDS DB by GeneID:84923See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 11693.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000403627.7 ENSP00000384648.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000403627.7Link to Ensembl Protein Viewer:ENSP00000384648.3Re-query CCDS DB by Nucleotide ID:ENST00000403627Re-query CCDS DB by Protein ID:ENSP00000384648
Original member Current member NCBI NM_032837.3 NP_116226.2 Accepted alive Link to Nucleotide Sequence:NM_032837.3Link to Protein Sequence:NP_116226.2Re-query CCDS DB by Nucleotide ID:NM_032837Re-query CCDS DB by Protein ID:NP_116226Link to BLAST:NP_116226.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116226.2 186 Q969W3-1 186 100% 0 0

Chromosomal Locations for CCDS 11693.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 73209529 73209768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73227165 73227264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73232086 73232306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (561 nt):
ATGGGGGGGCGCGGAGCAGACGCCGGAAGTAGTGGTGGTACGGGTCCGACTGAGGGGTACTCGCCACCGG
CTGCGTCCACCCGAGCGGCTGCGAGAGCCAAGGCCCGAGGGGGTGGGCGTGGCGGCCGCCGAAACACAAC
CCCCTCTGTTCCCTCTCTTCGCGGAGCGGCGCCGCGTAGCTTCCATCCGCCAGCTGCCATGAGCGAGCGC
CTCCGTCCCAGGAAAAGGAGAAGGAATGGCAACGAAGAAGACAACCATCTTCCCCCCCAGACCAAAAGAA
GTAGCAGAAACCCTGTCTTTCAGGATTCCTGGGACACAGAGTCTTCAGGCAGTGACAGTGGTGGGAGCAG
CAGCAGCAGCAGCAGCAGCATCAATAGCCCGGACAGGGCCAGCGGGCCGGAAGGCAGCTTGAGCCAGACC
ATGGCCGGATCCAGCCCTAACACGCCTCAGCCCGTGCCCGAGCAGTCCGCGCTGTGCCAAGGCCTCTACT
TCCACATCAACCAGACCCTGAGGGAGGCCCACTTCCACAGCCTACAGCACCGAGGGCGGCCTCTGACATG
A

Translation (186 aa):
MGGRGADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSER
LRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTESSGSDSGGSSSSSSSSINSPDRASGPEGSLSQT
MAGSSPNTPQPVPEQSALCQGLYFHINQTLREAHFHSLQHRGRPLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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