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Report for CCDS11713.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11713.1 Public Homo sapiens 17 SLC16A5 24 110 108 CCDS HistoryNCBI Gene:9121Re-query CCDS DB by CCDS ID:11713.1Re-query CCDS DB by GeneID:9121See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11713.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000329783.9 ENSP00000330141.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000329783.9Link to Ensembl Protein Viewer:ENSP00000330141.4Re-query CCDS DB by Nucleotide ID:ENST00000329783Re-query CCDS DB by Protein ID:ENSP00000330141
Original member Current member EBI ENST00000450736.6 ENSP00000390564.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000450736.6Link to Ensembl Protein Viewer:ENSP00000390564.2Re-query CCDS DB by Nucleotide ID:ENST00000450736Re-query CCDS DB by Protein ID:ENSP00000390564
Original member Current member EBI ENST00000580123.5 ENSP00000463434.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000580123.5Link to Ensembl Protein Viewer:ENSP00000463434.1Re-query CCDS DB by Nucleotide ID:ENST00000580123Re-query CCDS DB by Protein ID:ENSP00000463434
Original member Current member NCBI NM_001271765.2 NP_001258694.1 Accepted alive Link to Nucleotide Sequence:NM_001271765.2Link to Protein Sequence:NP_001258694.1Re-query CCDS DB by Nucleotide ID:NM_001271765Re-query CCDS DB by Protein ID:NP_001258694Link to BLAST:NP_001258694.1
Original member Current member NCBI NM_001369668.1 NP_001356597.1 Accepted alive Link to Nucleotide Sequence:NM_001369668.1Link to Protein Sequence:NP_001356597.1Re-query CCDS DB by Nucleotide ID:NM_001369668Re-query CCDS DB by Protein ID:NP_001356597Link to BLAST:NP_001356597.1
Original member Current member NCBI NM_004695.4 NP_004686.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004695.4Link to Protein Sequence:NP_004686.1Re-query CCDS DB by Nucleotide ID:NM_004695Re-query CCDS DB by Protein ID:NP_004686Link to BLAST:NP_004686.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258694.1 505 O15375-1 505 100% 0 0
NP_001356597.1 505 O15375-1 505 100% 0 0
NP_004686.1 505 O15375-1 505 100% 0 0

Chromosomal Locations for CCDS 11713.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 75093637 75093835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75098038 75098181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75100007 75100816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75103970 75104180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75105880 75106033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGCCCCAGGCCCTGGAGCGTGCAGATGGCAGCTGGGCCTGGGTGGTGCTGCTGGCCACCATGGTGACCC
AG
GGCCTCACCCTGGGCTTCCCCACGTGTATCGGCATCTTCTTCACTGAATTGCAATGGGAGTTCCAGGC
C
AGCAACAGCGAGACCTCTTGGTTCCCCTCCATCCTCACGGCTGTGCTCCACATGGCAGGGCCCCTGTGC
AGC
ATCCTGGTGGGACGCTTCGGCTGCCGAGTGACCGTGATGCTGGGGGGCGTGCTGGCCAGCCTGGGCA
TG
GTGGCCAGCTCCTTCTCTCACAACCTCAGCCAGCTCTACTTCACAGCAGGATTCATCACAGGCCTGGG
C
ATGTGCTTCAGCTTCCAGTCAAGCATCACGGTGCTGGGCTTCTACTTTGTCCGCCGGCGGGTGCTGGCC
AAC
GCGCTGGCCTCGATGGGCGTCTCCCTGGGCATCACCCTCTGGCCGCTGCTCTCCCGCTACCTTCTGG
AG
AACCTGGGCTGGAGGGGTACCTTCCTTGTCTTCGGCGGGATCTTTCTCCACTGCTGCATCTGCGGGGC
C
ATCATAAGGCCTGTGGCCACCAGTGTGGCCCCTGAGACCAAAGAATGTCCCCCGCCACCTCCCGAGACA
CCT
GCACTTGGCTGCCTGGCTGCATGCGGCCGGACCATCCAGCGCCACCTGGCCTTCGACATCCTGCGGC
AC
AACACAGGCTACTGCGTGTACATACTGGGTGTGATGTGGTCCGTCCTGGGCTTCCCACTGCCACAAGT
C
TTCCTGGTGCCATATGCCATGTGGCACAGCGTGGACGAGCAGCAGGCAGCCCTCCTCATCTCCATCATC
GGC
TTCAGCAACATCTTCCTGAGGCCCCTAGCCGGGCTGATGGCAGGACGGCCGGCCTTTGCTAGCCACC
GC
AAGTACCTGTTCAGCCTGGCACTCCTGCTCAATGGGCTCACTAACCTGGTGTGTGCGGCATCAGGTGA
C
TTCTGGGTGCTCGTGGGCTACTGCCTGGCGTACAGCGTGTCCATGAGTGGCATCGGCGCCCTCATCTTC
CAG
GTTCTCATGGACATCGTCCCCATGGATCAGTTCCCCAGAGCCCTGGGACTCTTCACTGTCCTGGACG
GC
CTTGCTTTCCTCATCTCCCCACCACTGGCCGGGTTGCTCCTGGACGCCACCAACAACTTTAGCTATGT
T
TTCTACATGTCCAGCTTCTTCCTCATCTCAGCTGCCCTCTTCATGGGTGGCAGCTTCTACGCCCTGCAG
AAG
AAGGAGCAAGGCAAGCAGGCTGTCGCGGCGGATGCCCTGGAGCGGGATCTTTTCTTGGAAGCCAAAG
AC
GGTCCTGGGAAGCAACGGTCCCCTGAGATCATGTGCCAGTCTTCCCGCCAGCCACGTCCAGCTGGCGT
C
AATAAGCATCTTTGGGGATGTCCTGCCTCCTCCAGGACCAGCCATGAGTGGCTCTTATGGCCAAAGGCG
GTA
CTGCAGGCCAAGCAAACGGCTCTGGGCTGGAATAGCCCTACCTGA


Translation (505 aa):
MPQALERADGSWAWVVLLATMVTQGLTLGFPTCIGIFFTELQWEFQASNSETSWFPSILTAVLHMAGPLC
S
ILVGRFGCRVTVMLGGVLASLGMVASSFSHNLSQLYFTAGFIT
GLGMCFSFQSSITVLGFYFVRRRVLA
N
ALASMGVSLGITLWPLLSRYLLENLGWRGTFLVFGGIFLHCCICGAIIRPVATSVAPETKECPPPPPET
P
ALGCLAACGRTIQRHLAFDILRHNTGYCVYILGVMWSVLGFPLPQVFLVPYAMWHSVDEQQAALLISII
G
FSNIFLRPLAGLMAGRPAFASHRKYLFSLALLLNGLTNLVCAASGDFWVLVGYCLAYSVSMSGIGALIF
Q
VLMDIVPMDQFPRALGLFTVLDGLAFLISPPLA
GLLLDATNNFSYVFYMSSFFLISAALFMGGSFYALQ
K
KEQGKQAVAADALERDLFLEAKDGPGKQRSPEI
MCQSSRQPRPAGVNKHLWGCPASSRTSHEWLLWPKA
V
LQAKQTALGWNSPT




Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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