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Report for CCDS11748.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11748.1 Public Homo sapiens 17 ST6GALNAC1 24 110 108 CCDS HistoryNCBI Gene:55808Re-query CCDS DB by CCDS ID:11748.1Re-query CCDS DB by GeneID:55808See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11748.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000156626.12 ENSP00000156626.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000156626.12Link to Ensembl Protein Viewer:ENSP00000156626.6Re-query CCDS DB by Nucleotide ID:ENST00000156626Re-query CCDS DB by Protein ID:ENSP00000156626
Original member Current member NCBI NM_018414.5 NP_060884.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018414.5Link to Protein Sequence:NP_060884.1Re-query CCDS DB by Nucleotide ID:NM_018414Re-query CCDS DB by Protein ID:NP_060884Link to BLAST:NP_060884.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060884.1 600 Q9NSC7 600 100% 0 0

Chromosomal Locations for CCDS 11748.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 76625330 76625527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76625819 76625918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76626006 76626095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76626289 76626392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76626651 76626789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76627067 76627238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76627415 76627583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76629012 76629711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76643508 76643638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1803 nt):
ATGAGGTCCTGCCTGTGGAGATGCAGGCACCTGAGCCAAGGCGTCCAGTGGTCCTTGCTTCTGGCTGTCC
TGGTCTTCTTTCTCTTCGCCTTGCCCTCTTTTATTAAGGAGCCTCAAACAAAGCCTTCCAGGCATCAACG
CACAGAGAACATTAAAGAAAGGTCTCTACAGTCCCTGGCAAAGCCTAAGTCCCAGGCACCCACAAGGGCA
AGGAGGACAACCATCTATGCAGAGCCAGTGCCAGAGAACAATGCCCTCAACACACAAACCCAGCCCAAGG
CCCACACCACCGGAGACAGAGGAAAGGAGGCCAACCAGGCACCGCCGGAGGAGCAGGACAAGGTGCCCCA
CACAGCACAGAGGGCAGCATGGAAGAGCCCAGAAAAAGAGAAAACCATGGTGAACACACTGTCACCCAGA
GGGCAAGATGCAGGGATGGCCTCTGGCAGGACAGAGGCACAATCATGGAAGAGCCAGGACACAAAGACGA
CCCAAGGAAATGGGGGCCAGACCAGGAAGCTGACGGCCTCCAGGACGGTGTCAGAGAAGCACCAGGGCAA
AGCGGCAACCACAGCCAAGACGCTCATTCCCAAAAGTCAGCACAGAATGCTGGCTCCCACAGGAGCAGTG
TCAACAAGGACGAGACAGAAAGGAGTGACCACAGCAGTCATCCCACCTAAGGAGAAGAAACCTCAGGCCA
CCCCACCCCCTGCCCCTTTCCAGAGCCCCACGACGCAGAGAAACCAAAGACTGAAGGCCGCCAACTTCAA
ATCTGAGCCTCGGTGGGATTTTGAGGAAAAATACAGCTTCGAAATAGGAGGCCTTCAGACGACTTGCCCT
GACTCTGTGAAGATCAAAGCCTCCAAGTCGCTGTGGCTCCAGAAACTCTTTCTGCCCAACCTCACTCTCT
TCCTGGACTCCAGACACTTCAACCAGAGTGAGTGGGACCGCCTGGAACACTTTGCACCACCCTTTGGCTT
CATGGAGCTCAACTACTCCTTGGTGCAGAAGGTCGTGACACGCTTCCCTCCAGTGCCCCAGCAGCAGCTG
CTCCTGGCCAGCCTCCCCGCTGGGAGCCTCCGGTGCATCACCTGTGCCGTGGTGGGCAACGGGGGCATCC
TGAACAACTCCCACATGGGCCAGGAGATAGACAGTCACGACTACGTGTTCCGATTGAGCGGAGCTCTCAT
TAAAGGCTACGAACAGGATGTGGGGACTCGGACATCCTTCTACGGCTTTACCGCCTTCTCCCTGACCCAG
TCACTCCTTATATTGGGCAATCGGGGTTTCAAGAACGTGCCTCTTGGGAAGGACGTCCGCTACTTGCACT
TCCTGGAAGGCACCCGGGACTATGAGTGGCTGGAAGCACTGCTTATGAATCAGACGGTGATGTCAAAAAA
CCTTTTCTGGTTCAGGCACAGACCCCAGGAAGCTTTTCGGGAAGCCCTGCACATGGACAGGTACCTGTTG
CTGCACCCAGACTTTCTCCGATACATGAAGAACAGGTTTCTGAGGTCTAAGACCCTGGATGGTGCCCACT
GGAGGATATACCGCCCCACCACTGGGGCCCTCCTGCTGCTCACTGCCCTTCAGCTCTGTGACCAGGTGAG
TGCTTATGGCTTCATCACTGAGGGCCATGAGCGCTTTTCTGATCACTACTATGATACATCATGGAAGCGG
CTGATCTTTTACATAAACCATGACTTCAAGCTGGAGAGAGAAGTCTGGAAGCGGCTACACGATGAAGGGA
TAATCCGGCTGTACCAGCGTCCTGGTCCCGGAACTGCCAAAGCCAAGAACTGA

Translation (600 aa):
MRSCLWRCRHLSQGVQWSLLLAVLVFFLFALPSFIKEPQTKPSRHQRTENIKERSLQSLAKPKSQAPTRA
RRTTIYAEPVPENNALNTQTQPKAHTTGDRGKEANQAPPEEQDKVPHTAQRAAWKSPEKEKTMVNTLSPR
GQDAGMASGRTEAQSWKSQDTKTTQGNGGQTRKLTASRTVSEKHQGKAATTAKTLIPKSQHRMLAPTGAV
STRTRQKGVTTAVIPPKEKKPQATPPPAPFQSPTTQRNQRLKAANFKSEPRWDFEEKYSFEIGGLQTTCP
DSVKIKASKSLWLQKLFLPNLTLFLDSRHFNQSEWDRLEHFAPPFGFMELNYSLVQKVVTRFPPVPQQQL
LLASLPAGSLRCITCAVVGNGGILNNSHMGQEIDSHDYVFRLSGALIKGYEQDVGTRTSFYGFTAFSLTQ
SLLILGNRGFKNVPLGKDVRYLHFLEGTRDYEWLEALLMNQTVMSKNLFWFRHRPQEAFREALHMDRYLL
LHPDFLRYMKNRFLRSKTLDGAHWRIYRPTTGALLLLTALQLCDQVSAYGFITEGHERFSDHYYDTSWKR
LIFYINHDFKLEREVWKRLHDEGIIRLYQRPGPGTAKAKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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