NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS11881.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11881.1 Public Homo sapiens 18 CABYR 24 110 108 CCDS HistoryNCBI Gene:26256Re-query CCDS DB by CCDS ID:11881.1Re-query CCDS DB by GeneID:26256See the combined annotation on chromosome 18 in Sequence Viewer

Public Note for CCDS 11881.1
This CCDS representation is supported by protein evidence in PMIDs 11820818 and 16139264.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 11881.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000486759.6 ENSP00000431142.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000486759.6Link to Ensembl Protein Viewer:ENSP00000431142.3Re-query CCDS DB by Nucleotide ID:ENST00000486759Re-query CCDS DB by Protein ID:ENSP00000431142
Original member Current member EBI ENST00000463087.5 ENSP00000432870.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000463087.5Link to Ensembl Protein Viewer:ENSP00000432870.1Re-query CCDS DB by Nucleotide ID:ENST00000463087Re-query CCDS DB by Protein ID:ENSP00000432870
Original member Current member EBI ENST00000621648.4 ENSP00000483621.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000621648.4Link to Ensembl Protein Viewer:ENSP00000483621.1Re-query CCDS DB by Nucleotide ID:ENST00000621648Re-query CCDS DB by Protein ID:ENSP00000483621
Original member Current member NCBI NM_012189.4 NP_036321.2 Accepted alive Link to Nucleotide Sequence:NM_012189.4Link to Protein Sequence:NP_036321.2Re-query CCDS DB by Nucleotide ID:NM_012189Re-query CCDS DB by Protein ID:NP_036321Link to BLAST:NP_036321.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036321.2 493 O75952-1 493 100% 0 0

Chromosomal Locations for CCDS 11881.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 24143115 24143259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24143360 24143413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24155701 24156983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGATTTCTTCAAAGCCCAGACTTGTCGTACCCTATGGCCTCAAGACTCTGCTCGAGGGAATTAGCAGAG
CTGTTCTCAAAACCAACCCATCAAACATCAACCAGTTTGCAGCAGCTTATTTTCAAGAACTTACTATGTA
TAGAGGGAATACTACTATGGATATAAAAGATCTGGTTAAACAATTTCATCAGATTAAAGTAGAGAAATGG
TCAGAAGGAACGACACCACAGAAGAAATTAGAATGTTTAAAAGAACCAGGAAAAACATCTGTAGAATCTA
AAGTACCTACCCAGATGGAAAAATCTACAGACACAGACGAGGACAATGTAACCAGAACAGAATATAGTGA
CAAAACCACCCAGTTTCCATCAGTTTATGCTGTGCCAGGCACTGAGCAAACGGAAGCAGTTGGTGGTCTT
TCTTCCAAACCAGCCACCCCTAAGACTACTACCCCACCCTCATCACCACCTCCAACAGCTGTCTCACCAG
AGTTTGCCTACGTCCCAGCTGACCCAGCTCAGCTTGCTGCTCAGATGTTAGGTAAAGTTTCATCTATTCA
TTCTGATCAATCTGATGTGTTAATGGTGGATGTGGCAACCAGTATGCCTGTTGTTATCAAGGAGGTGCCA
AGCTCAGAGGCTGCTGAAGATGTCATGGTGGCTGCTCCTCTTGTGTGTTCTGGAAAGGTGCTAGAAGTGC
AGGTTGTGAACCAAACATCTGTCCATGTAGATTTGGGTTCTCAACCTAAAGAAAATGAGGCTGAACCATC
AACGGCTTCCTCAGTCCCCTTGCAGGATGAACAAGAACCTCCTGCTTATGATCAAGCTCCTGAGGTCACT
TTGCAGGCTGATATTGAGGTTATGTCAACTGTTCATATATCATCTGTCTATAACGATGTGCCTGTGACTG
AAGGAGTTGTTTATATCGAGCAACTGCCAGAACAAATAGTTATCCCTTTTACTGATCAAGTTGCTTGTCT
TAAAGAAAATGAGCAGTCAAAAGAAAATGAGCAGTCACCACGAGTTAGTCCCAAATCTGTAGTAGAAAAG
ACCACCTCTGGCATGTCTAAAAAATCTGTAGAGTCTGTAAAACTTGCACAGTTGGAGGAGAATGCAAAAT
ATTCCTCAGTATATATGGAGGCAGAAGCAACAGCTCTGCTCTCTGACACATCTTTGAAAGGTCAGCCTGA
GGTACCTGCACAACTCCTGGATGCAGAAGGTGCTATCAAAATAGGCTCTGAAAAATCTCTGCACCTTGAA
GTGGAGATCACTTCAATAGTCTCTGACAATACTGGGCAGGAGGAGTCTGGGGAAAACTCTGTACCCCAGG
AGATGGAAGGCAAACCTGTGCTCTCTGGGGAAGCTGCAGAAGCAGTGCACTCAGGTACATCTGTAAAGTC
ATCTAGTGGCCCCTTCCCTCCTGCTCCAGAAGGCCTTACTGCACCAGAAATTGAACCAGAAGGGGAATCA
ACAGCTGAATAA

Translation (493 aa):
MISSKPRLVVPYGLKTLLEGISRAVLKTNPSNINQFAAAYFQELTMYRGNTTMDIKDLVKQFHQIKVEKW
SEGTTPQKKLECLKEPGKTSVESKVPTQMEKSTDTDEDNVTRTEYSDKTTQFPSVYAVPGTEQTEAVGGL
SSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQMLGKVSSIHSDQSDVLMVDVATSMPVVIKEVP
SSEAAEDVMVAAPLVCSGKVLEVQVVNQTSVHVDLGSQPKENEAEPSTASSVPLQDEQEPPAYDQAPEVT
LQADIEVMSTVHISSVYNDVPVTEGVVYIEQLPEQIVIPFTDQVACLKENEQSKENEQSPRVSPKSVVEK
TTSGMSKKSVESVKLAQLEENAKYSSVYMEAEATALLSDTSLKGQPEVPAQLLDAEGAIKIGSEKSLHLE
VEITSIVSDNTGQEESGENSVPQEMEGKPVLSGEAAEAVHSGTSVKSSSGPFPPAPEGLTAPEIEPEGES
TAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH