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Report for CCDS11912.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11912.1 Public Homo sapiens 18 ZNF24 24 110 108 CCDS HistoryNCBI Gene:7572Re-query CCDS DB by CCDS ID:11912.1Re-query CCDS DB by GeneID:7572See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11912.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261332.11 ENSP00000261332.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261332.11Link to Ensembl Protein Viewer:ENSP00000261332.5Re-query CCDS DB by Nucleotide ID:ENST00000261332Re-query CCDS DB by Protein ID:ENSP00000261332
Original member Current member EBI ENST00000399061.3 ENSP00000382015.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399061.3Link to Ensembl Protein Viewer:ENSP00000382015.2Re-query CCDS DB by Nucleotide ID:ENST00000399061Re-query CCDS DB by Protein ID:ENSP00000382015
Original member Current member NCBI NM_001375815.1 NP_001362744.1 Accepted alive Link to Nucleotide Sequence:NM_001375815.1Link to Protein Sequence:NP_001362744.1Re-query CCDS DB by Nucleotide ID:NM_001375815Re-query CCDS DB by Protein ID:NP_001362744Link to BLAST:NP_001362744.1
Original member Current member NCBI NM_006965.4 NP_008896.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006965.4Link to Protein Sequence:NP_008896.2Re-query CCDS DB by Nucleotide ID:NM_006965Re-query CCDS DB by Protein ID:NP_008896Link to BLAST:NP_008896.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001362744.1 368 P17028-1 368 100% 0 0
NP_008896.2 368 P17028-1 368 100% 0 0

Chromosomal Locations for CCDS 11912.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 35337232 35337770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35339829 35339976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35340231 35340650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGTCTGCACAGTCAGTGGAAGAAGATTCAATACTTATCATCCCAACTCCAGATGAAGAGGAAAAAATTC
TGAGAGTGAAGTTGGAGGAGGATCCTGATGGCGAAGAGGGATCAAGTATCCCCTGGAACCATCTCCCAGA
CCCAGAGATTTTCCGACAGCGATTCAGGCAGTTTGGATACCAGGATTCACCTGGGCCCCGTGAGGCTGTG
AGCCAGCTCCGAGAACTTTGCCGTCTGTGGCTCAGGCCAGAGACGCACACAAAAGAACAAATCTTGGAGC
TGGTAGTGCTGGAGCAGTTTGTTGCCATCCTACCCAAAGAGCTACAGACTTGGGTTCGAGATCATCATCC
AGAGAATGGAGAGGAGGCAGTGACAGTGCTGGAGGATTTGGAGAGTGAACTTGATGACCCTGGACAACCG
GTTTCTCTCCGTCGACGAAAACGGGAAGTACTAGTAGAAGACATGGTATCTCAAGAAGAAGCTCAGGGAT
TACCAAGTTCTGAGCTTGATGCTGTGGAGAACCAGCTCAAGTGGGCATCCTGGGAGCTCCATTCCCTAAG
GCACTGTGATGATGATGGTAGGACTGAAAATGGAGCACTAGCTCCAAAGCAGGAGCTTCCTTCAGCATTA
GAATCCCATGAAGTTCCTGGCACTCTCAATATGGGTGTTCCTCAAATTTTTAAATATGGAGAAACCTGTT
TCCCCAAGGGCAGGTTTGAAAGAAAGAGAAATCCCTCTCGAAAGAAACAACATATATGTGATGAATGTGG
AAAACACTTCAGTCAGGGCTCAGCCCTTATTCTTCATCAAAGAATTCACAGTGGGGAGAAACCTTATGGA
TGTGTTGAGTGTGGGAAAGCATTCAGCCGAAGTTCCATTCTTGTGCAACACCAGAGAGTCCACACTGGAG
AAAAACCTTACAAATGTCTTGAATGTGGGAAAGCCTTTAGCCAGAATTCGGGGCTTATTAATCATCAGAG
AATCCATACTGGGGAGAAACCTTATGAATGCGTTCAGTGTGGGAAATCGTATAGTCAAAGCTCAAATCTT
TTTAGACATCAGAGAAGACACAATGCAGAAAAACTTCTGAATGTTGTGAAAGTTTAA

Translation (368 aa):
MSAQSVEEDSILIIPTPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEIFRQRFRQFGYQDSPGPREAV
SQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVRDHHPENGEEAVTVLEDLESELDDPGQP
VSLRRRKREVLVEDMVSQEEAQGLPSSELDAVENQLKWASWELHSLRHCDDDGRTENGALAPKQELPSAL
ESHEVPGTLNMGVPQIFKYGETCFPKGRFERKRNPSRKKQHICDECGKHFSQGSALILHQRIHSGEKPYG
CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTGEKPYECVQCGKSYSQSSNL
FRHQRRHNAEKLLNVVKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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