NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS11935.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11935.1 Public Homo sapiens 18 CTIF 24 110 108 CCDS HistoryNCBI Gene:9811Re-query CCDS DB by CCDS ID:11935.1Re-query CCDS DB by GeneID:9811See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11935.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000256413.8 ENSP00000256413.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000256413.8Link to Ensembl Protein Viewer:ENSP00000256413.3Re-query CCDS DB by Nucleotide ID:ENST00000256413Re-query CCDS DB by Protein ID:ENSP00000256413
Original member Current member NCBI NM_014772.3 NP_055587.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014772.3Link to Protein Sequence:NP_055587.1Re-query CCDS DB by Nucleotide ID:NM_014772Re-query CCDS DB by Protein ID:NP_055587Link to BLAST:NP_055587.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055587.1 598 O43310-1 598 100% 0 0

Chromosomal Locations for CCDS 11935.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 48619566 48619745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 48636614 48636685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 48663752 48663825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 48664447 48664551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 48670669 48670744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 48711619 48711695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 48757919 48758405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 48761390 48761689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 48817221 48817376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 48857588 48857641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 48859344 48859559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1797 nt):
ATGGAAAACTCCTCTGCAGCATCAGCCTCCTCGGAGGCAGGGAGCAGCCGCTCCCAGGAGATCGAGGAGC
TGGAGCGCTTCATCGACAGCTACGTGCTGGAGTACCAGGTGCAGGGGCTGCTGGCTGACAAGACGGAGGG
TGATGGCGAGAGCGAGAGGACCCAGTCCCACATCTCCCAGTGGACAGCGGACTGCAGCGAACCGCTGGAC
AGCAGCTGTTCCTTCTCCCGAGGGCGAGCCCCCCCACAGCAGAATGGCAGCAAAGACAACTCTCTGGACA
TGCTGGGCACGGACATCTGGGCGGCCAACACCTTCGATTCCTTCAGTGGTGCCACCTGGGACCTGCAGCC
GGAAAAGCTGGACTTCACCCAGTTCCACCGCAAAGTCCGACACACGCCCAAGCAGCCCCTGCCACACATC
GACCGCGAAGGGTGTGGCAAAGGGAAGCTGGAAGATGGGGATGGCATCAACCTGAATGACATCGAGAAGG
TCCTTCCAGCCTGGCAGGGCTACCACCCGATGCCCCATGAAGTGGAGATCGCACACACCAAGAAGCTGTT
CCGCAGGAGGAGAAATGATCGAAGGCGGCAGCAGAGACCTCCGGGGGGCAACAAGCCCCAACAGCATGGT
GACCACCAGCCAGGCAGTGCCAAACACAACAGGGACCACCAGAAATCCTACCAGGGGGGCTCAGCACCCC
ACCCCTCAGGGAGGCCCACTCACCATGGCTACAGCCAGAACCGGCGCTGGCACCATGGCAACATGAAGCA
CCCACCAGGCGACAAGGGGGAGGCAGGCGCACACCGCAATGCCAAAGAGACCATGACCATCGAGAACCCA
AAACTGGAGGACACTGCAGGGGACACCGGGCACAGCAGCCTTGAGGCCCCCCGCAGCCCTGACACCCTGG
CCCCGGTGGCTTCTGAGCGGCTGCCCCCACAGCAGTCAGGGGGGCCAGAGGTTGAGACAAAACGTAAAGA
CAGTATTCTTCCCGAGCGCATCGGGGAGCGGCCCAAAATTACCCTGCTCCAGTCTTCCAAAGACAGACTG
CGGCGAAGGCTAAAGGAAAAGGATGAAGTGGCCGTGGAGACGACCACTCCCCAGCAGAACAAGATGGACA
AGCTGATCGAGATCCTGAACAGCATGCGGAACAACAGCAGCGACGTGGACACCAAGCTCACCACCTTCAT
GGAGGAGGCCCAGAACTCCACCAACTCCGAGGAGATGCTGGGCGAGATCGTGCGCACAATCTACCAGAAG
GCTGTGTCCGACCGCAGCTTCGCCTTCACCGCTGCCAAGCTCTGCGACAAGATGGCGCTCTTTATGGTGG
AGGGGACCAAGTTCCGGAGCCTGCTCCTCAACATGCTGCAGAAGGACTTCACGGTGCGCGAGGAGCTGCA
GCAGCAGGACGTGGAGCGCTGGCTGGGCTTCATCACCTTCCTGTGCGAGGTCTTCGGCACCATGCGCAGC
AGCACAGGCGAGCCCTTCCGTGTGCTCGTGTGCCCCATCTACACCTGCCTCAGGGAGCTCTTGCAATCTC
AGGATGTGAAGGAAGATGCTGTCCTTTGCTGCTCTATGGAGCTGCAGAGTACAGGCCGGCTGCTGGAGGA
ACAGCTGCCTGAGATGATGACAGAGCTCCTGGCCAGCGCACGGGACAAGATGCTGTGCCCCTCGGAGTCC
ATGCTGACCCGGTCGCTGCTCCTAGAGGTCATCGAGCTCCACGCTAACAGCTGGAACCCTCTGACGCCCC
CCATCACGCAGTACTACAACAGAACCATCCAGAAACTGACAGCCTGA

Translation (598 aa):
MENSSAASASSEAGSSRSQEIEELERFIDSYVLEYQVQGLLADKTEGDGESERTQSHISQWTADCSEPLD
SSCSFSRGRAPPQQNGSKDNSLDMLGTDIWAANTFDSFSGATWDLQPEKLDFTQFHRKVRHTPKQPLPHI
DREGCGKGKLEDGDGINLNDIEKVLPAWQGYHPMPHEVEIAHTKKLFRRRRNDRRRQQRPPGGNKPQQHG
DHQPGSAKHNRDHQKSYQGGSAPHPSGRPTHHGYSQNRRWHHGNMKHPPGDKGEAGAHRNAKETMTIENP
KLEDTAGDTGHSSLEAPRSPDTLAPVASERLPPQQSGGPEVETKRKDSILPERIGERPKITLLQSSKDRL
RRRLKEKDEVAVETTTPQQNKMDKLIEILNSMRNNSSDVDTKLTTFMEEAQNSTNSEEMLGEIVRTIYQK
AVSDRSFAFTAAKLCDKMALFMVEGTKFRSLLLNMLQKDFTVREELQQQDVERWLGFITFLCEVFGTMRS
STGEPFRVLVCPIYTCLRELLQSQDVKEDAVLCCSMELQSTGRLLEEQLPEMMTELLASARDKMLCPSES
MLTRSLLLEVIELHANSWNPLTPPITQYYNRTIQKLTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH