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Report for CCDS11946.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11946.1 Public Homo sapiens 18 SKA1 24 110 108 CCDS HistoryNCBI Gene:220134Re-query CCDS DB by CCDS ID:11946.1Re-query CCDS DB by GeneID:220134See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11946.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000285116.8 ENSP00000285116.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000285116.8Link to Ensembl Protein Viewer:ENSP00000285116.3Re-query CCDS DB by Nucleotide ID:ENST00000285116Re-query CCDS DB by Protein ID:ENSP00000285116
Original member Current member EBI ENST00000398452.6 ENSP00000381470.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398452.6Link to Ensembl Protein Viewer:ENSP00000381470.1Re-query CCDS DB by Nucleotide ID:ENST00000398452Re-query CCDS DB by Protein ID:ENSP00000381470
Original member Current member NCBI NM_001039535.3 NP_001034624.1 Accepted alive Link to Nucleotide Sequence:NM_001039535.3Link to Protein Sequence:NP_001034624.1Re-query CCDS DB by Nucleotide ID:NM_001039535Re-query CCDS DB by Protein ID:NP_001034624Link to BLAST:NP_001034624.1
Original member Current member NCBI NM_145060.4 NP_659497.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145060.4Link to Protein Sequence:NP_659497.1Re-query CCDS DB by Nucleotide ID:NM_145060Re-query CCDS DB by Protein ID:NP_659497Link to BLAST:NP_659497.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034624.1 255 Q96BD8-1 255 100% 0 0
NP_659497.1 255 Q96BD8-1 255 100% 0 0

Chromosomal Locations for CCDS 11946.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 50375831 50375918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50380126 50380250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50382129 50382226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50385216 50385353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50391124 50391293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50392099 50392247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGGCCTCGTCAGATCTGGAACAATTATGCTCTCATGTTAATGAAAAGATTGGCAATATTAAGAAAACCT
TATCATTAAGAAACTGTGGCCAGGAACCTACCTTGAAAACTGTATTAAATAAAATAGGAGATGAGATCAT
TGTAATAAATGAACTTCTAAATAAATTGGAATTGGAAATTCAGTATCAAGAACAAACCAACAATTCACTC
AAGGAACTCTGTGAATCTCTTGAAGAAGATTACAAAGACATAGAACATCTTAAAGAAAACGTTCCTTCCC
ATTTGCCTCAAGTAACAGTAACCCAGAGCTGTGTTAAGGGATCAGATCTTGATCCTGAAGAACCAATCAA
AGTTGAAGAACCTGAACCCGTAAAGAAGCCTCCCAAAGAGCAAAGAAGTATTAAGGAAATGCCATTTATA
ACTTGTGATGAGTTCAATGGTGTTCCTTCGTACATGAAATCCCGCTTAACCTATAATCAAATTAATGATG
TTATTAAAGAAATCAACAAGGCAGTAATTAGTAAATATAAAATCCTACATCAGCCAAAAAAGTCTATGAA
TTCTGTGACCAGAAATCTCTATCACAGATTTATTGATGAAGAAACGAAGGATACCAAAGGTCGTTATTTT
ATAGTGGAAGCTGACATAAAGGAGTTCACAACTTTGAAAGCTGACAAGAAGTTTCACGTGTTACTGAATA
TTTTACGACACTGCCGGAGGCTATCAGAGGTCCGAGGGGGAGGACTTACTCGTTATGTTATAACCTGA

Translation (255 aa):
MASSDLEQLCSHVNEKIGNIKKTLSLRNCGQEPTLKTVLNKIGDEIIVINELLNKLELEIQYQEQTNNSL
KELCESLEEDYKDIEHLKENVPSHLPQVTVTQSCVKGSDLDPEEPIKVEEPEPVKKPPKEQRSIKEMPFI
TCDEFNGVPSYMKSRLTYNQINDVIKEINKAVISKYKILHQPKKSMNSVTRNLYHRFIDEETKDTKGRYF
IVEADIKEFTTLKADKKFHVLLNILRHCRRLSEVRGGGLTRYVIT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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