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Report for CCDS12060.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12060.2 Public Homo sapiens 19 FAM174C 24 110 108 CCDS HistoryNCBI Gene:55009Re-query CCDS DB by CCDS ID:12060.2Re-query CCDS DB by GeneID:55009See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 12060.1
The coding region has been updated to represent an alternative coding sequence that is more supported by homology data. The updated CDS occurs upstream of the previous CDS, and the protein encoded by the update has a predicted signal peptide and two predicted transmembrane domains.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 12060.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409293.6 ENSP00000386557.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409293.6Link to Ensembl Protein Viewer:ENSP00000386557.3Re-query CCDS DB by Nucleotide ID:ENST00000409293Re-query CCDS DB by Protein ID:ENSP00000386557
Original member Current member NCBI NM_017914.4 NP_060384.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017914.4Link to Protein Sequence:NP_060384.3Re-query CCDS DB by Nucleotide ID:NM_017914Re-query CCDS DB by Protein ID:NP_060384Link to BLAST:NP_060384.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060384.3 132 Q9BVV8 132 100% 0 0

Chromosomal Locations for CCDS 12060.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 1275550 1275830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1277183 1277299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1278777 1278777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (399 nt):
ATGGGGCCGCGCGTGCTGCAGCCGCCGCTGCTGCTGCTCCTGCTGGCGCTGCTGCTGGCGGCGCTGCCGT
GCGGTGCCGAAGAGGCCTCGCCGCTGCGCCCCGCGCAGGTCACGTTGTCGCCGCCGCCGGCCGTGACGAA
CGGGAGCCAGCCGGGCGCGCCACACAACAGCACGCACACGCGTCCGCCGGGGGCGTCGGGCTCGGCGCTG
ACGCGCTCCTTCTACGTGATCCTGGGCTTCTGCGGCCTGACCGCGCTCTACTTCCTGATCCGGGCGTTTA
GGTTGAAGAAGCCTCAGCGGAGGCGATACGGCCTCCTCGCCAACACTGAGGACCCCACGGAGATGGCCTC
GCTGGACAGCGACGAGGAGACGGTGTTTGAGTCCCGGAATCTGAGATGA

Translation (132 aa):
MGPRVLQPPLLLLLLALLLAALPCGAEEASPLRPAQVTLSPPPAVTNGSQPGAPHNSTHTRPPGASGSAL
TRSFYVILGFCGLTALYFLIRAFRLKKPQRRRYGLLANTEDPTEMASLDSDEETVFESRNLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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