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Report for CCDS12094.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12094.1 Public Homo sapiens 19 SGTA 24 110 108 CCDS HistoryNCBI Gene:6449Re-query CCDS DB by CCDS ID:12094.1Re-query CCDS DB by GeneID:6449See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12094.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000221566.7 ENSP00000221566.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000221566.7Link to Ensembl Protein Viewer:ENSP00000221566.1Re-query CCDS DB by Nucleotide ID:ENST00000221566Re-query CCDS DB by Protein ID:ENSP00000221566
Original member Current member EBI ENST00000677149.1 ENSP00000503397.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000677149.1Link to Ensembl Protein Viewer:ENSP00000503397.1Re-query CCDS DB by Nucleotide ID:ENST00000677149Re-query CCDS DB by Protein ID:ENSP00000503397
Original member Current member EBI ENST00000676943.1 ENSP00000504495.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676943.1Link to Ensembl Protein Viewer:ENSP00000504495.1Re-query CCDS DB by Nucleotide ID:ENST00000676943Re-query CCDS DB by Protein ID:ENSP00000504495
Original member Current member NCBI NM_003021.4 NP_003012.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003021.4Link to Protein Sequence:NP_003012.1Re-query CCDS DB by Nucleotide ID:NM_003021Re-query CCDS DB by Protein ID:NP_003012Link to BLAST:NP_003012.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003012.1 313 O43765 313 100% 0 0

Chromosomal Locations for CCDS 12094.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 2757343 2757457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2757693 2757782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2759257 2759294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2761460 2761522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2762506 2762644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2763653 2763757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2765186 2765285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2767136 2767220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2767580 2767686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2768969 2769068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGACAACAAGAAGCGCCTGGCCTACGCCATCATCCAGTTCCTGCATGACCAGCTCCGGCACGGGGGCC
TCTCGTCCGATGCTCAGGAGAGCTTGGAAGTCGCCATCCAGTGCCTGGAGACTGCGTTTGGGGTGACGGT
AGAAGACAGTGACCTTGCGCTCCCTCAGACTCTGCCGGAGATATTTGAAGCGGCTGCCACGGGCAAGGAG
ATGCCGCAGGACCTGAGGAGCCCCGCGCGAACCCCGCCTTCCGAGGAGGACTCAGCAGAGGCAGAGCGCC
TCAAAACCGAAGGAAACGAGCAGATGAAAGTGGAAAACTTTGAAGCTGCCGTGCATTTCTACGGAAAAGC
CATCGAGCTCAACCCAGCCAACGCCGTCTATTTCTGCAACAGAGCCGCAGCCTACAGCAAACTCGGCAAC
TACGCAGGCGCGGTGCAGGACTGTGAGCGGGCCATCTGCATTGACCCGGCCTACAGCAAGGCCTACGGCA
GGATGGGCCTGGCGCTCTCCAGCCTCAACAAGCACGTGGAGGCCGTGGCTTACTACAAGAAGGCTCTGGA
GCTGGACCCCGACAACGAGACATACAAGTCCAACCTCAAGATAGCGGAGCTGAAGCTGCGGGAGGCCCCC
AGCCCCACGGGAGGCGTGGGCAGCTTCGACATCGCCGGCCTGCTGAACAACCCTGGCTTCATGAGCATGG
CTTCGAACCTAATGAACAATCCCCAGATTCAGCAGCTCATGTCCGGCATGATTTCGGGTGGCAACAACCC
CTTGGGAACTCCCGGCACCAGCCCCTCGCAGAACGACCTGGCCAGCCTCATCCAGGCGGGCCAGCAGTTT
GCCCAGCAGATGCAGCAGCAGAACCCAGAGTTGATAGAGCAGCTCAGGAGCCAGATCCGGAGTCGGACGC
CCAGCGCCAGCAACGACGACCAGCAGGAGTGA

Translation (313 aa):
MDNKKRLAYAIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTVEDSDLALPQTLPEIFEAAATGKE
MPQDLRSPARTPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGN
YAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP
SPTGGVGSFDIAGLLNNPGFMSMASNLMNNPQIQQLMSGMISGGNNPLGTPGTSPSQNDLASLIQAGQQF
AQQMQQQNPELIEQLRSQIRSRTPSASNDDQQE


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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