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Report for CCDS12266.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12266.2 Public Homo sapiens 19 ZNF441 24 110 108 CCDS HistoryNCBI Gene:126068Re-query CCDS DB by CCDS ID:12266.2Re-query CCDS DB by GeneID:126068See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 12266.1
The coding region has been updated to represent an alternative splice pattern and to extend the N-terminus to one that is more supported by available transcript and paralogous protein data. The update adds an N-terminal KRAB box to the protein.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 12266.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357901.5 ENSP00000350576.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357901.5Link to Ensembl Protein Viewer:ENSP00000350576.4Re-query CCDS DB by Nucleotide ID:ENST00000357901Re-query CCDS DB by Protein ID:ENSP00000350576
Original member Current member NCBI NM_152355.3 NP_689568.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152355.3Link to Protein Sequence:NP_689568.2Re-query CCDS DB by Nucleotide ID:NM_152355Re-query CCDS DB by Protein ID:NP_689568Link to BLAST:NP_689568.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689568.2 693 Q8N8Z8-1 693 100% 0 0

Chromosomal Locations for CCDS 12266.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11767194 11767196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11777611 11777737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11778330 11778393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11780019 11781906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2082 nt):
ATGGACTCAGTGGCATTTGAGGATGTGGCTATAAACTTCACCTGTGAGGAGTGGGCTTTGCTGGGTCCAT
CACAGAAGAGTCTCTACAGAGATGTGATGCAGGAAACCATCAGAAACCTGGACTGTATAGGAATGATATG
GCAAAATCATGATATAGAAGAAGATCAGTACAAAGATCTCAGAAGAAATCTAAGATGTCATATGGTAGAG
AGAGCCTGTGAAATTAAAGATAATAGTCAATGTGGAGGACCCTTTACCCAGACTCAAGACAGTATTGTGA
ACGAGAAAATACCTGGAGTAGATCCATGGGAAAGCAGTGAGTGTACAGACGTCCTCATGGGTCGTTCATC
TCTTAATTGCTACGTTAGAGTTGACAGTGAACACAAACCATGTGAGTATCAAGAATATGGAGAGAAGCCA
TATACACATACACAATGTGGGACAGCTTTCAGTTATCAGCCCTGCTTTCAAATACATGAAAGACCTCAGC
ATGGAAAGAAACTCTATGATTGTAAGGAATGTGCAAGCTTCAGTTCTCTTGAAAACCTTCAAAGACACAT
GGCAGCACACCATGGAGATGGACCTCGTATATGTAAGTTGTGTGGAAACGCCTTTATTTGGCCTAGTTTA
TTTCATATGCTTAGAAGAACTCACACTGAAGAGAAACCATATGAATATGAGCAGTGTTCTACAGCGTTTC
CTGCTTATAGTTCCACTCTAAGACATGAAAGAACACACAGTGGAGAGAAACCCTATCAATGTAAACAATG
TGGGAAAGCCTTCAGTTGTTCCTGTTACACTCAACTATATGAAAGGACTCACACTGGAGAACAATCCTAT
GAATGTAAGCAATGTGGGAAAGCATTTTATCATCTTGGAAGCTTTCAAAGACACATGATAGTGCACACTG
GAGATGGGCCTCATAAATGTAAGATATGTGGAAAAGGCTTTCTTTCTCCCAGTTCAGTTCGAAGACATAA
AAGAACTCACACTGGAGAGAAACCGTATGAATGTAAGTATTGTGGGAAAGCATTCTCTGATTGCACAGGT
TTTCGAAGACACATGATAACGCACACTGGAGATGGACCTCATAAATGCAAGGTATGTGGGAAAGCCTTTG
ATTCTCCCAGTTTATGTCGAAGGCATGAAACAACTCATACTGGGGAGAAACCCTATAAATGTGAATGTGG
GAAAGCCTTTAGTGATTTCTATTACTTTCGAAATCATGAAACTACTCACACTGGAGAGAAGCCATATAAA
TGTAAACAATGTGGAAAAGCCTTCATTTGTTGCACTTACCTTCAAATACATGAAAGAATTCACACTGGGG
AGAGACCCTATAAATGTAAACAATGCGGAAAAGCCTTCAGGTCTTCCAATTACATTCGAGTACATGAAAA
GACTCACACTGGAGAAAAGCCCTATGAATGTAAGCAGTGTGGAAAAGCACTTTCTCATCTGAAAAGCTTT
CAGAGACACATGATAATGCACACTGGAGATGGACCTCATAAATGTAAGATATGTGGGAAAAGCTTTGATT
CTCCCAGTTCATTTCGAAGACATGAAAGAATTCACACTGGGGAGAGACCCTATAAGTGTAAACTATGTGG
GAAAGGCTTCAGGTCTTCCAGTTACATTCAACTACATGAAAGGACTCACACTGGAGAGAAACCCTATGGT
TGTCAGCAATGTGGGAAAGCATTATCTGATCTCTCAAGCTTTCGAAGACACATGATAACACATACTGGAA
ATGGACCTCATAAATGTAAGATATGTGGGAAAGGCTTTGATTATCCCAGTTCAGTGCAAAGACATGAAAG
AACTCACACTGGAGAGAAACCCTATGAATGCAAGGAATGTGGTAAAGCCTTCAGTCATTCAAGTTACTTA
CGAATACACGAAAGAGTTCATACTGGAGAGAAGCCGTATAAATGTAAGGAATGTGGGAAACCATTCCATT
GTCCCAGTGCCTTTCATAAACATGAAAGGACCCACAGTATGGAGAAACCCTATAAGTGTAAAGAATGTGG
GGAAGCATTTCATTGTATCAGTTCCTTTCATAAACATGAAATGACTCACTAG

Translation (693 aa):
MDSVAFEDVAINFTCEEWALLGPSQKSLYRDVMQETIRNLDCIGMIWQNHDIEEDQYKDLRRNLRCHMVE
RACEIKDNSQCGGPFTQTQDSIVNEKIPGVDPWESSECTDVLMGRSSLNCYVRVDSEHKPCEYQEYGEKP
YTHTQCGTAFSYQPCFQIHERPQHGKKLYDCKECASFSSLENLQRHMAAHHGDGPRICKLCGNAFIWPSL
FHMLRRTHTEEKPYEYEQCSTAFPAYSSTLRHERTHSGEKPYQCKQCGKAFSCSCYTQLYERTHTGEQSY
ECKQCGKAFYHLGSFQRHMIVHTGDGPHKCKICGKGFLSPSSVRRHKRTHTGEKPYECKYCGKAFSDCTG
FRRHMITHTGDGPHKCKVCGKAFDSPSLCRRHETTHTGEKPYKCECGKAFSDFYYFRNHETTHTGEKPYK
CKQCGKAFICCTYLQIHERIHTGERPYKCKQCGKAFRSSNYIRVHEKTHTGEKPYECKQCGKALSHLKSF
QRHMIMHTGDGPHKCKICGKSFDSPSSFRRHERIHTGERPYKCKLCGKGFRSSSYIQLHERTHTGEKPYG
CQQCGKALSDLSSFRRHMITHTGNGPHKCKICGKGFDYPSSVQRHERTHTGEKPYECKECGKAFSHSSYL
RIHERVHTGEKPYKCKECGKPFHCPSAFHKHERTHSMEKPYKCKECGEAFHCISSFHKHEMTH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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