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Report for CCDS12271.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12271.1 Public Homo sapiens 19 ZNF442 24 110 108 CCDS HistoryNCBI Gene:79973Re-query CCDS DB by CCDS ID:12271.1Re-query CCDS DB by GeneID:79973See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12271.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000242804.9 ENSP00000242804.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000242804.9Link to Ensembl Protein Viewer:ENSP00000242804.4Re-query CCDS DB by Nucleotide ID:ENST00000242804Re-query CCDS DB by Protein ID:ENSP00000242804
Original member Current member EBI ENST00000545749.2 ENSP00000440162.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545749.2Link to Ensembl Protein Viewer:ENSP00000440162.2Re-query CCDS DB by Nucleotide ID:ENST00000545749Re-query CCDS DB by Protein ID:ENSP00000440162
Original member Current member NCBI NM_030824.3 NP_110451.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030824.3Link to Protein Sequence:NP_110451.1Re-query CCDS DB by Nucleotide ID:NM_030824Re-query CCDS DB by Protein ID:NP_110451Link to BLAST:NP_110451.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_110451.1 627 Q9H7R0-1 627 100% 0 0

Chromosomal Locations for CCDS 12271.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 12349701 12351318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12352010 12352070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12352988 12353114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12363554 12363631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1884 nt):
ATGATTGTATTTGGGGGAGAAGACAGAAGTGATCTCTTCCTTCCTGACTCTCAGACTAATGAAGAGAGAA
AACAATATGATTCAGTAGCCTTTGAGGATGTGGCGGTGAACTTCACCCAGGAAGAGTGGGCTTTGCTGGG
TCCATCACAGAAGAGTCTGTACAGAGATGTGATGTGGGAAACCATTAGGAACCTGGACTGTATAGGAATG
AAATGGGAAGACACAAACATTGAAGATCAGCACAGAAATCCCAGGAGGAGCCTAAGATGTCATATCATAG
AGAGATTTAGTGAAAGTCGCCAGCCAGATAGTACTGTGAATGAAAAACCTCCTGGAGTAGATCCATGTAA
AAGCAGTGTGTGTGGAGAAATCATGGGTTGTTCATTCCTTAATTGCTATATCACATTTGATGCTGGACAC
AAACCAGATGAGTGTCAGGAATATGGAGAGAAGCCACATACACATAAACAATGTGGGACAGCCTTCAATT
ATCACCACTCCTTTCAAACACAGGAAAGACCTCACACTGGAAAGAAACGCTATGATTGTAAGGAATGTGG
GAAAACCTTCAGTTCTTCGGGAAACCTTCGAAGACACATAATAGTACAACGTGGAGGTGGACCTTATATA
TGTAAGTTGTGTGGGAAAGCCTTTTTTTGGCCTAGTTTATTTCGTATGCATGAAAGAACTCACACTGGAG
AGAAACCGTATGAATGTAAGCAGTGTTGTAAAGCCTTCCCTATTTACAGTTCCTATCTAAGACATGAAAG
AACACACACTGGGGAGAAACCATATGAATGCAAGCACTGTTCCAAAGCCTTCCCTGATTACAGTTCCTAT
GTAAGACATGAAAGAACTCACACTGGAGAAAAACCCTATAAATGTAAACGATGTGGAAGAGCCTTCAGTG
TTTCCAGTTCCCTTCGAATACATGAAAGAACTCACACTGGAGAGAAACCCTATGAATGCAAGCAATGCGG
GAAAGCATTTCATCATCTGGGAAGCTTTCAAAGACACATGATAAGGCACACTGGAGATGGACCTCATAAA
TGTAAGATATGTGGGAAAGGCTTTGATTGTCCTAGTTCACTGCAAAGTCATGAAAGAACTCACACTGGAG
AGAAACCCTATGAATGCAAGCAGTGTGGGAAAGCGTTATCTCATCACTCAAGCTTTCGAAGTCATATGAT
AATGCACACTGGAGATGGACCTCACAAATGCAAGGTATGTGGGAAAGCCTTCATTTATCCCAGTGTATTT
CAAGGACATGAAAGGACTCATACTGGTGAGAAACCCTATGAATGTAAAGAATGTGGTAAAGCCTTCCGTA
TTTCTAGTTCCCTTCGAAGACATGAAACAACTCACACTGGAGAGAAACCCTATAAATGTAAATGTGGGAA
AGCCTTTATTGATTTCTATTCCTTTCAAAATCATGAAACAACTCACACTGGAGAGAAGCCATATGAGTGT
AAGGAATGTGGGAAAGCATTCAGTTGTTTCACATACCTTTCTCAACATAGAAGGACTCACATGGCTGAAA
AACCTTATGAATGTAAAACATGTAAGAAAGCCTTCAGTCATTTTGGTAACTTAAAAGTCCATGAAAGGAT
TCACACTGGAGAGAAGCCATATGAATGTAAGGAATGCAGGAAAGCATTCTCTTGGCTCACTTGCCTTCTG
CGACATGAAAGAATTCACACTGGAAAGAAATCTTATGAATGTCAACAATGTGGTAAAGCCTTCACTCGTT
CTCGTTTCCTTCGAGGACATGAAAAAACTCACACTGGAGAGAAGATGCATGAATGTAAGGAATGTGGGAA
GGCACTGAGTTCTCTCAGTTCCTTGCATAGACATAAAAGGACTCACTGGAGAGATACTCTATAA

Translation (627 aa):
MIVFGGEDRSDLFLPDSQTNEERKQYDSVAFEDVAVNFTQEEWALLGPSQKSLYRDVMWETIRNLDCIGM
KWEDTNIEDQHRNPRRSLRCHIIERFSESRQPDSTVNEKPPGVDPCKSSVCGEIMGCSFLNCYITFDAGH
KPDECQEYGEKPHTHKQCGTAFNYHHSFQTQERPHTGKKRYDCKECGKTFSSSGNLRRHIIVQRGGGPYI
CKLCGKAFFWPSLFRMHERTHTGEKPYECKQCCKAFPIYSSYLRHERTHTGEKPYECKHCSKAFPDYSSY
VRHERTHTGEKPYKCKRCGRAFSVSSSLRIHERTHTGEKPYECKQCGKAFHHLGSFQRHMIRHTGDGPHK
CKICGKGFDCPSSLQSHERTHTGEKPYECKQCGKALSHHSSFRSHMIMHTGDGPHKCKVCGKAFIYPSVF
QGHERTHTGEKPYECKECGKAFRISSSLRRHETTHTGEKPYKCKCGKAFIDFYSFQNHETTHTGEKPYEC
KECGKAFSCFTYLSQHRRTHMAEKPYECKTCKKAFSHFGNLKVHERIHTGEKPYECKECRKAFSWLTCLL
RHERIHTGKKSYECQQCGKAFTRSRFLRGHEKTHTGEKMHECKECGKALSSLSSLHRHKRTHWRDTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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