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Report for CCDS12399.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12399.1 Public Homo sapiens 19 SUGP1 24 110 108 CCDS HistoryNCBI Gene:57794Re-query CCDS DB by CCDS ID:12399.1Re-query CCDS DB by GeneID:57794See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12399.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000247001.10 ENSP00000247001.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000247001.10Link to Ensembl Protein Viewer:ENSP00000247001.3Re-query CCDS DB by Nucleotide ID:ENST00000247001Re-query CCDS DB by Protein ID:ENSP00000247001
Original member Current member NCBI NM_172231.4 NP_757386.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_172231.4Link to Protein Sequence:NP_757386.2Re-query CCDS DB by Nucleotide ID:NM_172231Re-query CCDS DB by Protein ID:NP_757386Link to BLAST:NP_757386.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_757386.2 645 Q8IWZ8-1 645 100% 0 0

Chromosomal Locations for CCDS 12399.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 19276648 19276674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19276947 19277076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19277734 19277879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19278690 19278796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19279213 19279390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19280185 19280291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19296989 19297344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19302265 19302388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19303348 19303448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19303724 19303847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19305849 19306076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19310097 19310200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19316422 19316593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19320463 19320496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1938 nt):
ATGAGTCTCAAGATGGACAACCGGGATGTTGCAGGAAAGGCTAACCGGTGGTTTGGGGTTGCTCCCCCTA
AATCTGGAAAAATGAACATGAACATCCTTCACCAGGAAGAGCTCATCGCTCAGAAGAAACGGGAAATTGA
AGCCAAAATGGAACAGAAAGCCAAGCAGAATCAGGTGGCCAGCCCTCAGCCCCCACATCCTGGCGAAATC
ACAAATGCACACAACTCTTCCTGCATTTCCAACAAGTTTGCCAACGATGGTAGCTTCTTGCAGCAGTTTC
TGAAGTTGCAGAAGGCACAGACCAGCACAGACGCCCCGACCAGTGCGCCCAGCGCCCCTCCCAGCACACC
CACCCCCAGCGCTGGGAAGAGGTCCCTGCTCATCAGCAGGCGGACAGGCCTGGGGCTGGCCAGCCTGCCG
GGCCCTGTGAAGAGCTACTCCCACGCCAAGCAGCTGCCCGTGGCGCACCGCCCGAGTGTCTTCCAGTCCC
CTGACGAGGACGAGGAGGAGGACTATGAGCAGTGGCTGGAGATCAAAGTTTCACCCCCAGAGGGAGCCGA
GACTCGGAAAGTGATAGAGAAATTGGCCCGCTTTGTGGCAGAAGGAGGCCCCGAGTTAGAAAAAGTAGCT
ATGGAGGACTACAAGGATAACCCAGCATTTGCATTTTTGCACGATAAGAATAGCAGGGAATTCCTCTACT
ACAGGAAGAAGGTGGCTGAGATAAGAAAGGAAGCACAGAAGTCGCAGGCAGCCTCTCAGAAAGTTTCACC
CCCAGAGGACGAAGAGGTCAAGAACCTTGCAGAAAAGTTGGCCAGGTTCATAGCGGACGGGGGTCCCGAG
GTGGAAACCATTGCCCTCCAGAACAACCGTGAGAACCAGGCATTCAGCTTTCTGTATGAGCCCAATAGCC
AAGGGTACAAGTACTACCGACAGAAGCTGGAGGAGTTCCGGAAAGCCAAGGCCAGCTCCACAGGCAGCTT
CACAGCACCTGATCCCGGCCTGAAGCGCAAGTCCCCTCCTGAGGCCCTGTCAGGGTCCTTACCCCCAGCC
ACCACCTGCCCCGCCTCGTCCACGCCTGCGCCCACTATCATCCCTGCTCCAGCTGCCCCCGGGAAGCCAG
CCTCCGCAGCCACCGTGAAGAGGAAGCGGAAGAGCCGGTGGGGGCCTGAAGAGGATAAGGTAGAGCTCCC
ACCTGCTGAACTGGTGCAGAGGGACGTGGATGCCTCTCCCTCGCCTCTGTCAGTTCAGGACCTCAAGGGG
CTCGGCTATGAGAAGGGGAAGCCTGTGGGTCTAGTGGGCGTCACAGAGCTTTCAGACGCCCAGAAGAAGC
AGCTGAAGGAGCAGCAGGAGATGCAGCAGATGTACGACATGATCATGCAGCACAAGCGGGCCATGCAGGA
CATGCAGCTGCTGTGGGAGAAGGCAGTCCAACAGCACCAGCACGGCTATGACAGTGATGAGGAGGTGGAC
AGCGAGCTGGGCACCTGGGAGCACCAGCTGCGGCGCATGGAGATGGATAAGACCAGGGAATGGGCCGAGC
AGCTGACAAAGATGGGCCGGGGCAAGCACTTCATCGGAGACTTCCTGCCTCCAGACGAGCTGGAAAAGTT
TATGGAGACCTTCAAGGCCCTGAAGGAGGGCCGTGAGCCTGACTACTCAGAGTACAAGGAGTTCAAGCTG
ACTGTGGAGAACATCGGCTACCAGATGCTGATGAAGATGGGCTGGAAGGAGGGCGAGGGGCTGGGCTCAG
AGGGCCAGGGCATCAAGAACCCAGTGAACAAGGGCACCACCACAGTGGACGGCGCTGGCTTCGGCATTGA
CCGGCCGGCGGAGCTCTCCAAGGAGGACGACGAGTATGAGGCGTTCCGCAAGAGGATGATGCTGGCCTAC
CGCTTCCGGCCCAACCCCCTGAACAATCCCAGACGGCCTTACTACTGA

Translation (645 aa):
MSLKMDNRDVAGKANRWFGVAPPKSGKMNMNILHQEELIAQKKREIEAKMEQKAKQNQVASPQPPHPGEI
TNAHNSSCISNKFANDGSFLQQFLKLQKAQTSTDAPTSAPSAPPSTPTPSAGKRSLLISRRTGLGLASLP
GPVKSYSHAKQLPVAHRPSVFQSPDEDEEEDYEQWLEIKVSPPEGAETRKVIEKLARFVAEGGPELEKVA
MEDYKDNPAFAFLHDKNSREFLYYRKKVAEIRKEAQKSQAASQKVSPPEDEEVKNLAEKLARFIADGGPE
VETIALQNNRENQAFSFLYEPNSQGYKYYRQKLEEFRKAKASSTGSFTAPDPGLKRKSPPEALSGSLPPA
TTCPASSTPAPTIIPAPAAPGKPASAATVKRKRKSRWGPEEDKVELPPAELVQRDVDASPSPLSVQDLKG
LGYEKGKPVGLVGVTELSDAQKKQLKEQQEMQQMYDMIMQHKRAMQDMQLLWEKAVQQHQHGYDSDEEVD
SELGTWEHQLRRMEMDKTREWAEQLTKMGRGKHFIGDFLPPDELEKFMETFKALKEGREPDYSEYKEFKL
TVENIGYQMLMKMGWKEGEGLGSEGQGIKNPVNKGTTTVDGAGFGIDRPAELSKEDDEYEAFRKRMMLAY
RFRPNPLNNPRRPYY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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