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Report for CCDS1254.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1254.1 Public Homo sapiens 1 POGK 24 110 108 CCDS HistoryNCBI Gene:57645Re-query CCDS DB by CCDS ID:1254.1Re-query CCDS DB by GeneID:57645See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1254.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367875.1 ENSP00000356849.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367875.1Link to Ensembl Protein Viewer:ENSP00000356849.1Re-query CCDS DB by Nucleotide ID:ENST00000367875Re-query CCDS DB by Protein ID:ENSP00000356849
Original member Current member EBI ENST00000367876.9 ENSP00000356850.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367876.9Link to Ensembl Protein Viewer:ENSP00000356850.4Re-query CCDS DB by Nucleotide ID:ENST00000367876Re-query CCDS DB by Protein ID:ENSP00000356850
Original member Current member NCBI NM_017542.5 NP_060012.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017542.5Link to Protein Sequence:NP_060012.3Re-query CCDS DB by Nucleotide ID:NM_017542Re-query CCDS DB by Protein ID:NP_060012Link to BLAST:NP_060012.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060012.3 609 Q9P215 609 100% 0 0

Chromosomal Locations for CCDS 1254.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 166840957 166841088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166846612 166846738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166847494 166847592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166848938 166850409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1830 nt):
ATGGAGTCCACAGCCTACCCTCTCAATTTGAGCCTGAAAGAAGAGGAAGAGGAAGAAGAGATTCAGAGCC
GGGAACTAGAGGACGGCCCGGCAGACATGCAGAAAGTACGAATCTGCTCTGAGGGCGGATGGGTACCGGC
CCTATTTGATGAGGTGGCCATATATTTTTCCGATGAGGAATGGGAAGTTTTGACGGAGCAACAAAAGGCC
CTCTACCGGGAAGTCATGAGGATGAATTATGAAACTGTCCTGTCCCTGGAATTCCCATTCCCTAAGCCAG
ACATGATCACCCGTTTGGAAGGGGAGGAGGAGTCTCAGAATTCTGACGAGTGGCAGCTCCAAGGAGGCAC
CTCTGCAGAAAATGAAGAATCTGACGTAAAGCCTCCAGACTGGCCAAACCCAATGAATGCTACCTCCCAG
TTTCCTCAGCCTCAGCACTTTGACAGCTTTGGCCTCCGTCTGCCTCGGGATATCACAGAGCTGCCCGAGT
GGAGTGAGGGGTACCCCTTCTACATGGCCATGGGCTTCCCAGGGTATGACCTCTCGGCTGATGACATAGC
TGGGAAGTTTCAGTTCAGCCGGGGCATGCGCCGCAGTTACGACGCAGGGTTCAAGCTGATGGTAGTGGAA
TATGCTGAGAGTACCAACAACTGCCAGGCTGCCAAGCAGTTTGGAGTATTGGAAAAAAACGTTCGAGACT
GGCGCAAAGTGAAGCCACAGCTTCAAAACGCCCACGCCATGCGGCGGGCATTCCGAGGCCCCAAGAATGG
GAGGTTTGCTCTGGTGGACCAGCGTGTGGCCGAATATGTCAGATACATGCAGGCCAAAGGGGACCCCATC
ACCCGGGAGGCGATGCAGCTGAAAGCTCTCGAAATCGCCCAGGAAATGAACATTCCAGAGAAAGGGTTCA
AGGCAAGCTTGGGTTGGTGTCGAAGAATGATGAGAAGGTATGACCTGTCTCTGAGGCATAAAGTGCCCGT
GCCCCAGCACCTGCCGGAAGACCTGACTGAGAAACTCGTCACTTACCAGCGCAGTGTCCTGGCTCTGCGC
AGGGCGCATGACTATGAGGTAGCTCAGATGGGGAATGCAGATGAGACGCCCATTTGTTTAGAGGTGCCAT
CACGGGTAACTGTTGATAACCAGGGCGAAAAGCCTGTCTTGGTCAAGACACCAGGCAGGGAAAAACTGAA
AATCACAGCAATGCTTGGTGTCTTGGCTGATGGGAGGAAGTTACCACCGTACATCATTTTGAGGGGAACA
TATATCCCCCCGGGGAAGTTTCCCAGTGGGATGGAAATTCGCTGCCACCGGTATGGGTGGATGACTGAAG
ACTTGATGCAGGACTGGTTGGAAGTGGTGTGGAGACGGAGGACAGGAGCAGTGCCCAAGCAGCGAGGGAT
GCTGATCTTGAATGGCTTCCGGGGCCATGCCACAGATTCCGTGAAGAACTCCATGGAAAGCATGAACACT
GACATGGTGATCATCCCAGGGGGTCTGACCTCACAGCTTCAGGTGCTGGATGTCGTGGTCTACAAGCCAC
TGAATGACAGTGTGCGGGCCCAGTACTCCAACTGGCTTCTGGCTGGGAACCTGGCGCTGAGCCCAACCGG
GAATGCTAAGAAGCCACCCCTGGGCCTCTTTCTGGAGTGGGTCATGGTCGCGTGGAATAGCATCTCAAGT
GAGTCCATCGTCCAAGGGTTCAAGAAGTGCCATATCTCCAGCAACTTGGAGGAGGAAGACGATGTCCTGT
GGGAAATCGAGAGTGAGTTGCCAGGAGGAGGAGAACCACCAAAAGATTGTGACACCGAAAGCATGGCTGA
GAGCAACTGA

Translation (609 aa):
MESTAYPLNLSLKEEEEEEEIQSRELEDGPADMQKVRICSEGGWVPALFDEVAIYFSDEEWEVLTEQQKA
LYREVMRMNYETVLSLEFPFPKPDMITRLEGEEESQNSDEWQLQGGTSAENEESDVKPPDWPNPMNATSQ
FPQPQHFDSFGLRLPRDITELPEWSEGYPFYMAMGFPGYDLSADDIAGKFQFSRGMRRSYDAGFKLMVVE
YAESTNNCQAAKQFGVLEKNVRDWRKVKPQLQNAHAMRRAFRGPKNGRFALVDQRVAEYVRYMQAKGDPI
TREAMQLKALEIAQEMNIPEKGFKASLGWCRRMMRRYDLSLRHKVPVPQHLPEDLTEKLVTYQRSVLALR
RAHDYEVAQMGNADETPICLEVPSRVTVDNQGEKPVLVKTPGREKLKITAMLGVLADGRKLPPYIILRGT
YIPPGKFPSGMEIRCHRYGWMTEDLMQDWLEVVWRRRTGAVPKQRGMLILNGFRGHATDSVKNSMESMNT
DMVIIPGGLTSQLQVLDVVVYKPLNDSVRAQYSNWLLAGNLALSPTGNAKKPPLGLFLEWVMVAWNSISS
ESIVQGFKKCHISSNLEEEDDVLWEIESELPGGGEPPKDCDTESMAESN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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