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Report for CCDS12613.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12613.1 Public Homo sapiens 19 PSG6 24 110 108 CCDS HistoryNCBI Gene:5675Re-query CCDS DB by CCDS ID:12613.1Re-query CCDS DB by GeneID:5675See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12613.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000292125.6 ENSP00000292125.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000292125.6Link to Ensembl Protein Viewer:ENSP00000292125.2Re-query CCDS DB by Nucleotide ID:ENST00000292125Re-query CCDS DB by Protein ID:ENSP00000292125
Original member Current member NCBI NM_002782.5 NP_002773.1 Accepted alive Link to Nucleotide Sequence:NM_002782.5Link to Protein Sequence:NP_002773.1Re-query CCDS DB by Nucleotide ID:NM_002782Re-query CCDS DB by Protein ID:NP_002773Link to BLAST:NP_002773.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002773.1 435 Q00889-1 435 100% 0 0

Chromosomal Locations for CCDS 12613.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 42903654 42903721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42906922 42907176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42907576 42907854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42910580 42910858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42916125 42916487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42917729 42917792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1308 nt):
ATGGGACCCCTCTCAGCCCCTCCCTGCACTCAGCACATCACCTGGAAGGGGCTCCTGCTCACAGCATCAC
TTTTAAACTTCTGGAACCTGCCCACCACTGCCCAAGTAATAATTGAAGCCAAGCCACCCAAAGTTTCCGA
GGGGAAGGATGTTCTTCTACTTGTCCACAATTTGCCCCAGAATCTTACTGGCTACATCTGGTACAAAGGG
CAAATGACGGACCTCTACCATTACATTACATCATATGTAGTACACGGTCAAATTATATATGGGCCTGCCT
ACAGTGGACGAGAAACAGTATATTCCAATGCATCCCTGCTGATCCAGAATGTCACACAGGAGGATGCAGG
ATCCTACACCTTACACATCATAAAGCGAGGCGATGGGACTGGAGGAGTAACTGGATATTTCACTGTCACC
TTATACTCGGAGACTCCCAAGCCCTCCATCTCCAGCAGCAACTTAAACCCCAGGGAGGTCATGGAGGCTG
TGCGCTTAATCTGTGATCCTGAGACTCCGGATGCAAGCTACCTGTGGTTGCTGAATGGTCAGAACCTCCC
TATGACTCACAGGTTGCAGCTGTCCAAAACCAACAGGACCCTCTATCTATTTGGTGTCACAAAGTATATT
GCAGGACCCTATGAATGTGAAATACGGAACCCAGTGAGTGCCAGCCGCAGTGACCCAGTCACCCTGAATC
TCCTCCCGAAGCTGCCCATGCCTTACATCACCATCAACAACTTAAACCCCAGGGAGAAGAAGGATGTGTT
AGCCTTCACCTGTGAACCTAAGAGTCGGAACTACACCTACATTTGGTGGCTAAATGGTCAGAGCCTCCCG
GTCAGTCCGAGGGTAAAGCGACCCATTGAAAACAGGATACTCATTCTACCCAGTGTCACGAGAAATGAAA
CAGGACCCTATCAATGTGAAATACGGGACCGATATGGTGGCATCCGCAGTAACCCAGTCACCCTGAATGT
CCTCTATGGTCCAGACCTCCCCAGAATTTACCCTTCATTCACCTATTACCGTTCAGGAGAAAACCTCGAC
TTGTCCTGCTTTGCGGACTCTAACCCACCGGCAGAGTATTCTTGGACAATTAATGGGAAGTTTCAGCTAT
CAGGACAAAAGCTCTTTATCCCCCAAATTACTACAAATCATAGCGGGCTCTATGCTTGCTCTGTTCGTAA
CTCAGCCACTGGCAAGGAAATCTCCAAATCCATGATAGTCAAAGTCTCTGAGACAGCATCTCCCCAGGTT
ACCTATGCTGGTCCAAACACCTGGTTTCAAGAAATCCTTCTGCTGTGA

Translation (435 aa):
MGPLSAPPCTQHITWKGLLLTASLLNFWNLPTTAQVIIEAKPPKVSEGKDVLLLVHNLPQNLTGYIWYKG
QMTDLYHYITSYVVHGQIIYGPAYSGRETVYSNASLLIQNVTQEDAGSYTLHIIKRGDGTGGVTGYFTVT
LYSETPKPSISSSNLNPREVMEAVRLICDPETPDASYLWLLNGQNLPMTHRLQLSKTNRTLYLFGVTKYI
AGPYECEIRNPVSASRSDPVTLNLLPKLPMPYITINNLNPREKKDVLAFTCEPKSRNYTYIWWLNGQSLP
VSPRVKRPIENRILILPSVTRNETGPYQCEIRDRYGGIRSNPVTLNVLYGPDLPRIYPSFTYYRSGENLD
LSCFADSNPPAEYSWTINGKFQLSGQKLFIPQITTNHSGLYACSVRNSATGKEISKSMIVKVSETASPQV
TYAGPNTWFQEILLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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