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Report for CCDS1263.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1263.1 Public Homo sapiens 1 RCSD1 24 110 108 CCDS HistoryNCBI Gene:92241Re-query CCDS DB by CCDS ID:1263.1Re-query CCDS DB by GeneID:92241See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1263.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367854.8 ENSP00000356828.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367854.8Link to Ensembl Protein Viewer:ENSP00000356828.3Re-query CCDS DB by Nucleotide ID:ENST00000367854Re-query CCDS DB by Protein ID:ENSP00000356828
Original member Current member NCBI NM_052862.4 NP_443094.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052862.4Link to Protein Sequence:NP_443094.3Re-query CCDS DB by Nucleotide ID:NM_052862Re-query CCDS DB by Protein ID:NP_443094Link to BLAST:NP_443094.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443094.3 416 Q6JBY9-1 416 100% 0 0

Chromosomal Locations for CCDS 1263.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 167630424 167630429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 167683900 167684001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 167685421 167685510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 167690049 167690120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 167694099 167694302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 167697099 167697842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 167704664 167704696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGGAGGAAAGACCGGCAGAGACCAATGCCAATGTGGACAACTCGGCGTCCCCCTCGGTGGCCCAGCTGG
CCGGGCGGTTTAGGGAGCAGGCGGCTGCAGCCAAGGAGACACCAGCCAGTAAACCAACCCGAAGGAAACC
GCCCTGTTCCCTCCCCCTGTTCCCCCCCAAGGTAGACCTGGGCCAGAATGGTGAGGAGAAATCACCACCC
AATGCGAGCCACCCTCCTAAATTCAAGGTCAAGAGCTCGCCTCTGATTGAGAAGCTTCAGGCCAATTTAA
CCTTTGACCCAGCTGCTCTACTGCCTGGGGCCTCACCCAAGAGTCCTGGACTCAAGGCTATGGTGTCGCC
ATTTCACAGCCCACCTTCTACCCCCAGCAGCCCTGGTGTGCGATCTAGGCCCAGCGAGGCAGAGGAGGTG
CCTGTCAGCTTCGACCAGCCCCCTGAAGGCAGTCATCTGCCCTGTTACAACAAGGTGCGGACGAGGGGCT
CAATAAAAAGGCGCCCTCCCTCCAGGCGATTCCGAAGGTCACAGTCAGACTGTGGAGAACTTGGAGATTT
CAGGGCGGTGGAGTCATCTCAGCAGAACGGTGCTAAGGAAGAGGATGGGGATGAAGTGTTGCCATCCAAG
AGCAAGGCCCCAGGATCCCCTTTGTCCAGTGAGGGAGCAGCGGGAGAGGGAGTGAGAACCCTGGGACCTG
CTGAAAAGCCTCCTCTGAGGAGGTCACCCAGCAGGACAGAGAAGCAGGAGGAGGACAGGGCCACAGAGGA
AGCCAAGAACGGTGAAAAGGCCAGGCGGAGTTCAGAGGAGGTGGACGGCCAGCACCCGGCCCAAGAGGAG
GTCCCGGAATCGCCCCAGACCTCTGGCCCAGAGGCAGAAAATAGGTGTGGGAGCCCCAGGGAGGAAAAGC
CAGCTGGAGAGGAAGCAGAGATGGAAAAGGCTACAGAGGTGAAGGGGGAGAGGGTGCAAAATGAAGAGGT
GGGACCTGAACATGACAGCCAAGAAACAAAGAAGCTGGAGGAGGGAGCTGCAGTGAAGGAGACCCCCCAC
AGTCCCCCTGGAGGAGTGAAGGGCGGAGATGTCCCCAAGCAGGAAAAAGGCAAGGAAAAACAACAGGAGG
GGGCAGTGCTCGAGCCAGGCTGCAGCCCCCAGACCGGCCCTGCCCAGCTGGAGACCAGCAGTGAGGTCCA
GAGCGAGCCAGCAGTCCCCAAGCCGGAGGATGACACTCCTGTCCAGGACACTAAAATGTGA

Translation (416 aa):
MEERPAETNANVDNSASPSVAQLAGRFREQAAAAKETPASKPTRRKPPCSLPLFPPKVDLGQNGEEKSPP
NASHPPKFKVKSSPLIEKLQANLTFDPAALLPGASPKSPGLKAMVSPFHSPPSTPSSPGVRSRPSEAEEV
PVSFDQPPEGSHLPCYNKVRTRGSIKRRPPSRRFRRSQSDCGELGDFRAVESSQQNGAKEEDGDEVLPSK
SKAPGSPLSSEGAAGEGVRTLGPAEKPPLRRSPSRTEKQEEDRATEEAKNGEKARRSSEEVDGQHPAQEE
VPESPQTSGPEAENRCGSPREEKPAGEEAEMEKATEVKGERVQNEEVGPEHDSQETKKLEEGAAVKETPH
SPPGGVKGGDVPKQEKGKEKQQEGAVLEPGCSPQTGPAQLETSSEVQSEPAVPKPEDDTPVQDTKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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