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Report for CCDS12651.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12651.1 Public Homo sapiens 19 CLPTM1 24 110 108 CCDS HistoryNCBI Gene:1209Re-query CCDS DB by CCDS ID:12651.1Re-query CCDS DB by GeneID:1209See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12651.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337392.10 ENSP00000336994.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000337392.10Link to Ensembl Protein Viewer:ENSP00000336994.4Re-query CCDS DB by Nucleotide ID:ENST00000337392Re-query CCDS DB by Protein ID:ENSP00000336994
Original member Current member NCBI NM_001294.4 NP_001285.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001294.4Link to Protein Sequence:NP_001285.1Re-query CCDS DB by Nucleotide ID:NM_001294Re-query CCDS DB by Protein ID:NP_001285Link to BLAST:NP_001285.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001285.1 669 O96005-1 669 100% 0 0

Chromosomal Locations for CCDS 12651.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 44955396 44955467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44961963 44962075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44973087 44973210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44974439 44974597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44977343 44977460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44985218 44985303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44986455 44986575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44987179 44987423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44988080 44988173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44990395 44990585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44990850 44990945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44991238 44991373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44992233 44992400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44992611 44992897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2010 nt):
ATGGCGGCGGCGCAGGAGGCGGACGGGGCCCGCAGCGCCGTGGTGGCGGCCGGGGGAGGCAGCTCCGGTC
AGGTGACCAGCAATGGCAGCATCGGGAGGGACCCGCCAGCGGAGACCCAGCCTCAGAACCCACCGGCCCA
GCCGGCACCCAATGCCTGGCAGGTCATCAAAGGTGTGCTGTTTAGGATCTTCATCATCTGGGCCATCAGC
AGTTGGTTCCGCCGAGGGCCGGCCCCTCAGGACCAGGCGGGCCCCGGAGGAGCTCCACGCGTCGCCAGCC
GCAACCTGTTCCCCAAAGACACTTTAATGAACCTGCATGTGTACATCTCAGAGCACGAGCACTTTACAGA
CTTCAACGCCACGTCGGCACTCTTCTGGGAACAGCACGATCTTGTGTATGGCGACTGGACTAGCGGCGAG
AACTCAGACGGCTGCTACGAGCACTTTGCTGAGCTCGATATCCCACAGAGCGTCCAGCAGAACGGCTCCA
TCTACATCCACGTTTACTTCACCAAGAGTGGCTTCCACCCAGACCCCCGGCAGAAGGCCCTGTACCGCCG
GCTTGCCACAGTCCACATGTCCCGGATGATCAACAAATACAAGCGCAGACGATTTCAGAAAACCAAGAAC
CTGCTGACAGGAGAGACAGAAGCGGACCCAGAAATGATCAAGAGGGCTGAGGACTATGGGCCTGTGGAGG
TGATCTCCCATTGGCACCCCAACATCACCATCAACATCGTGGACGACCACACGCCGTGGGTGAAGGGCAG
TGTGCCCCCTCCCCTGGATCAATATGTGAAGTTCGACGCCGTGAGCGGTGACTACTATCCCATCATCTAC
TTCAATGACTACTGGAACCTGCAGAAGGACTACTACCCCATCAACGAGAGCCTGGCCAGCCTGCCGCTCC
GCGTCTCCTTCTGCCCACTCTCGCTTTGGCGCTGGCAGCTCTATGCTGCCCAGAGCACCAAGTCGCCCTG
GAACTTCCTGGGTGATGAGTTGTACGAGCAGTCAGATGAGGAGCAGGACTCGGTGAAGGTGGCCCTGCTG
GAGACCAACCCCTACCTGCTGGCGCTCACCATCATCGTGTCTATCGTTCACAGTGTCTTCGAGTTCCTGG
CCTTCAAGAATGATATCCAGTTCTGGAACAGCCGGCAGTCCCTGGAGGGCCTGTCCGTGCGCTCCGTCTT
CTTCGGCGTTTTCCAGTCATTCGTGGTCCTCCTCTACATCCTGGACAACGAGACCAACTTCGTGGTCCAG
GTCAGCGTCTTCATTGGGGTCCTCATCGACCTCTGGAAGATCACCAAGGTCATGGACGTCCGGCTGGACC
GAGAGCACAGGGTGGCAGGAATCTTCCCCCGCCTATCCTTCAAGGACAAGTCCACGTATATCGAGTCCTC
GACCAAAGTGTATGATGATATGGCATTCCGGTACCTGTCCTGGATCCTCTTCCCGCTCCTGGGCTGCTAT
GCCGTCTACAGTCTTCTGTACCTGGAGCACAAGGGCTGGTACTCCTGGGTGCTCAGCATGCTCTACGGCT
TCCTGCTGACCTTCGGCTTCATCACCATGACGCCCCAGCTCTTCATCAACTACAAGCTCAAGTCTGTGGC
CCACCTTCCCTGGCGCATGCTCACCTACAAGGCCCTCAACACATTCATCGACGACCTGTTCGCCTTTGTC
ATCAAGATGCCCGTTATGTACCGGATCGGCTGCCTGCGGGACGATGTGGTTTTCTTCATCTACCTCTACC
AACGGTGGATCTACCGCGTCGACCCCACCCGAGTCAACGAGTTTGGCATGAGTGGAGAAGACCCCACAGC
TGCCGCCCCCGTGGCCGAGGTTCCCACAGCAGCAGGGGCCCTCACGCCCACACCTGCACCCACCACGACC
ACCGCCACCAGGGAGGAGGCCTCCACGTCCCTGCCCACCAAGCCCACCCAGGGGGCCAGCTCTGCCAGCG
AGCCCCAGGAAGCCCCTCCAAAGCCAGCAGAGGACAAGAAAAAGGATTAG

Translation (669 aa):
MAAAQEADGARSAVVAAGGGSSGQVTSNGSIGRDPPAETQPQNPPAQPAPNAWQVIKGVLFRIFIIWAIS
SWFRRGPAPQDQAGPGGAPRVASRNLFPKDTLMNLHVYISEHEHFTDFNATSALFWEQHDLVYGDWTSGE
NSDGCYEHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSRMINKYKRRRFQKTKN
LLTGETEADPEMIKRAEDYGPVEVISHWHPNITINIVDDHTPWVKGSVPPPLDQYVKFDAVSGDYYPIIY
FNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQLYAAQSTKSPWNFLGDELYEQSDEEQDSVKVALL
ETNPYLLALTIIVSIVHSVFEFLAFKNDIQFWNSRQSLEGLSVRSVFFGVFQSFVVLLYILDNETNFVVQ
VSVFIGVLIDLWKITKVMDVRLDREHRVAGIFPRLSFKDKSTYIESSTKVYDDMAFRYLSWILFPLLGCY
AVYSLLYLEHKGWYSWVLSMLYGFLLTFGFITMTPQLFINYKLKSVAHLPWRMLTYKALNTFIDDLFAFV
IKMPVMYRIGCLRDDVVFFIYLYQRWIYRVDPTRVNEFGMSGEDPTAAAPVAEVPTAAGALTPTPAPTTT
TATREEASTSLPTKPTQGASSASEPQEAPPKPAEDKKKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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