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Report for CCDS12686.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12686.1 Public Homo sapiens 19 PTGIR 24 110 108 CCDS HistoryNCBI Gene:5739Re-query CCDS DB by CCDS ID:12686.1Re-query CCDS DB by GeneID:5739See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12686.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000291294.7 ENSP00000291294.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000291294.7Link to Ensembl Protein Viewer:ENSP00000291294.1Re-query CCDS DB by Nucleotide ID:ENST00000291294Re-query CCDS DB by Protein ID:ENSP00000291294
Original member Current member NCBI NM_000960.4 NP_000951.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000960.4Link to Protein Sequence:NP_000951.1Re-query CCDS DB by Nucleotide ID:NM_000960Re-query CCDS DB by Protein ID:NP_000951Link to BLAST:NP_000951.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000951.1 386 P43119 386 100% 0 0

Chromosomal Locations for CCDS 12686.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 46621280 46621672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46623458 46624225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGGCGGATTCGTGCAGGAACCTCACCTACGTGCGGGGCTCGGTGGGGCCGGCCACCAGCACCCTGATGT
TCGTGGCCGGTGTGGTGGGCAACGGGCTGGCCCTGGGCATCCTGAGCGCACGGCGACCGGCGCGCCCCTC
GGCCTTCGCGGTGCTGGTGACCGGACTGGCGGCCACCGACCTGCTGGGCACCAGCTTCCTGAGCCCGGCC
GTGTTCGTGGCCTATGCGCGCAACAGCTCCCTGCTGGGCCTGGCCCGAGGCGGCCCCGCCCTGTGCGATG
CCTTCGCCTTCGCCATGACCTTCTTCGGCCTGGCGTCCATGCTCATCCTCTTTGCCATGGCCGTGGAGCG
CTGCCTGGCGCTGAGCCACCCCTACCTCTACGCGCAGCTGGACGGGCCCCGCTGCGCCCGCCTGGCGCTG
CCAGCCATCTACGCCTTCTGCGTCCTCTTCTGCGCGCTGCCCCTGCTGGGCCTGGGCCAACACCAGCAGT
ACTGCCCCGGCAGCTGGTGCTTCCTCCGCATGCGCTGGGCCCAGCCGGGCGGCGCCGCCTTCTCGCTGGC
CTACGCCGGCCTGGTGGCCCTGCTGGTGGCTGCCATCTTCCTCTGCAACGGCTCGGTCACCCTCAGCCTC
TGCCGCATGTACCGCCAGCAGAAGCGCCACCAGGGCTCTCTGGGTCCACGGCCGCGCACCGGAGAGGACG
AGGTGGACCACCTGATCCTGCTGGCCCTCATGACAGTGGTCATGGCCGTGTGCTCCCTGCCTCTCACGAT
CCGCTGCTTCACCCAGGCTGTCGCCCCTGACAGCAGCAGTGAGATGGGGGACCTCCTTGCCTTCCGCTTC
TACGCCTTCAACCCCATCCTGGACCCCTGGGTCTTCATCCTTTTCCGCAAGGCTGTCTTCCAGCGACTCA
AGCTCTGGGTCTGCTGCCTGTGCCTCGGGCCTGCCCACGGAGACTCGCAGACACCCCTTTCCCAGCTCGC
CTCAGGGAGGAGGGACCCAAGGGCCCCCTCTGCTCCTGTGGGAAAGGAGGGGAGCTGCGTGCCTTTGTCG
GCTTGGGGCGAGGGGCAGGTGGAGCCCTTGCCTCCCACACAGCAGTCCAGCGGCAGCGCCGTGGGAACGT
CGTCCAAAGCAGAAGCCAGCGTCGCCTGCTCCCTCTGCTGA

Translation (386 aa):
MADSCRNLTYVRGSVGPATSTLMFVAGVVGNGLALGILSARRPARPSAFAVLVTGLAATDLLGTSFLSPA
VFVAYARNSSLLGLARGGPALCDAFAFAMTFFGLASMLILFAMAVERCLALSHPYLYAQLDGPRCARLAL
PAIYAFCVLFCALPLLGLGQHQQYCPGSWCFLRMRWAQPGGAAFSLAYAGLVALLVAAIFLCNGSVTLSL
CRMYRQQKRHQGSLGPRPRTGEDEVDHLILLALMTVVMAVCSLPLTIRCFTQAVAPDSSSEMGDLLAFRF
YAFNPILDPWVFILFRKAVFQRLKLWVCCLCLGPAHGDSQTPLSQLASGRRDPRAPSAPVGKEGSCVPLS
AWGEGQVEPLPPTQQSSGSAVGTSSKAEASVACSLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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