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Report for CCDS1270.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1270.1 Public Homo sapiens 1 TIPRL 24 110 108 CCDS HistoryNCBI Gene:261726Re-query CCDS DB by CCDS ID:1270.1Re-query CCDS DB by GeneID:261726See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1270.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367833.7 ENSP00000356807.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367833.7Link to Ensembl Protein Viewer:ENSP00000356807.2Re-query CCDS DB by Nucleotide ID:ENST00000367833Re-query CCDS DB by Protein ID:ENSP00000356807
Original member Current member NCBI NM_152902.5 NP_690866.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152902.5Link to Protein Sequence:NP_690866.1Re-query CCDS DB by Nucleotide ID:NM_152902Re-query CCDS DB by Protein ID:NP_690866Link to BLAST:NP_690866.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_690866.1 272 O75663-1 272 100% 0 0

Chromosomal Locations for CCDS 1270.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 168179078 168179181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168183902 168184081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168184779 168184878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168191369 168191500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168196547 168196642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168198919 168198981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168199903 168200046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (819 nt):
ATGATGATCCACGGCTTCCAGAGCAGCCACCGGGATTTCTGCTTCGGGCCCTGGAAGCTGACGGCGTCCA
AGACCCACATCATGAAGTCGGCGGATGTGGAGAAATTAGCCGATGAATTACATATGCCATCTCTCCCTGA
AATGATGTTTGGAGACAACGTTTTAAGAATCCAGCATGGGTCTGGCTTTGGAATTGAGTTCAATGCTACA
GATGCGTTAAGATGTGTAAACAACTACCAAGGAATGCTTAAAGTGGCCTGTGCTGAAGAGTGGCAAGAAA
GCAGGACGGAGGGTGAACACTCCAAAGAGGTTATTAAACCATATGATTGGACCTATACAACAGATTATAA
GGGAACCTTACTTGGAGAATCTCTTAAGTTAAAGGTTGTACCTACAACAGATCATATAGATACAGAAAAA
TTGAAAGCCAGAGAACAGATTAAGTTTTTTGAAGAAGTTCTCCTTTTTGAGGATGAACTTCATGATCATG
GAGTTTCAAGCCTGAGTGTGAAGATTAGAGTAATGCCTTCTAGCTTTTTCCTGCTGTTGCGGTTTTTCTT
GAGAATTGATGGGGTGCTTATCAGAATGAATGACACGAGACTTTACCATGAGGCTGACAAGACCTACATG
TTACGAGAATATACGTCACGAGAAAGCAAAATTTCTAGTTTGATGCATGTTCCACCTTCCCTCTTCACGG
AACCTAATGAAATATCCCAGTATTTACCAATAAAGGAAGCAGTTTGTGAGAAGCTAATATTTCCAGAAAG
AATTGATCCTAACCCAGCAGACTCACAAAAAAGTACACAAGTGGAATAA

Translation (272 aa):
MMIHGFQSSHRDFCFGPWKLTASKTHIMKSADVEKLADELHMPSLPEMMFGDNVLRIQHGSGFGIEFNAT
DALRCVNNYQGMLKVACAEEWQESRTEGEHSKEVIKPYDWTYTTDYKGTLLGESLKLKVVPTTDHIDTEK
LKAREQIKFFEEVLLFEDELHDHGVSSLSVKIRVMPSSFFLLLRFFLRIDGVLIRMNDTRLYHEADKTYM
LREYTSRESKISSLMHVPPSLFTEPNEISQYLPIKEAVCEKLIFPERIDPNPADSQKSTQVE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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