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Genome Displays Related Resources Gene HomoloGene MANE RefSeq
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Report for CCDS12799.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
12799.1 |
Public |
Homo sapiens |
19 |
SHANK1 |
24 |
110 |
108 |
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Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 12799.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
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EBI |
ENST00000293441.6 |
ENSP00000293441.1 |
MANE Select |
Accepted |
alive |
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NCBI |
NM_016148.5 |
NP_057232.2 |
MANE Select |
Accepted |
alive |
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RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_057232.2 |
2161 |
Q9Y566-1 |
2161 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 12799.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (6486 nt): ATGACCCACAGCCCCGCGACAAGCGAGGACGAGGAACGCCACAGTGCCAGCGAGTGTCCCGAGGGGGGCT CAGAGTCCGACAGCTCCCCAGACGGGCCAGGTCGAGGCCCCCGGGGGACCCGGGGCCAGGGCAGTGGGGC ACCTGGTAGCCTGGCCTCTGTTAGAGGCCTCCAGGGCCGCTCAATGTCCGTCCCAGACGACGCCCACTTC AGCATGATGGTCTTCAGGATTGGCATCCCGGACCTGCACCAGACAAAATGCCTTCGCTTCAACCCCGATG CCACCATCTGGACGGCCAAGCAGCAGGTGCTCTGTGCCCTGAGCGAGAGCCTGCAGGATGTGCTCAACTA TGGCCTGTTCCAACCGGCCACCTCCGGCCGCGATGCCAACTTCCTGGAGGAGGAGAGGCTGCTGCGGGAG TACCCCCAGTCCTTTGAGAAGGGGGTCCCCTACCTGGAGTTCCGATACAAGACCCGAGTTTACAAACAGA CCAACCTGGATGAGAAGCAGCTGGCCAAGTTGCACACGAAGACGGGGTTGAAGAAGTTCCTGGAGTATGT GCAGCTCGGGACATCTGACAAGGTGGCGCGGCTGCTGGACAAGGGGCTGGACCCCAATTACCATGACTCG GATTCGGGAGAGACCCCCTTGACACTGGCGGCCCAGACCGAAGGCTCTGTAGAGGTGATTCGAACCCTGT GCCTGGGCGGGGCCCACATTGACTTCCGGGCCCGGGATGGCATGACCGCACTGCATAAGGCCGCATGCGC CCGACACTGCCTGGCACTCACGGCGCTCCTGGACCTTGGGGGTTCCCCCAACTACAAGGACCGTCGGGGG CTGACCCCTCTGTTCCACACGGCCATGGTGGGTGGTGACCCCCGATGCTGCGAGCTGCTCCTGTTCAACA GGGCCCAGCTGGGCATAGCTGATGAGAACGGCTGGCAGGAAATCCACCAGGCCTGCCAGCGGGGTCACTC TCAGCACCTGGAGCATCTGCTTTTCTACGGGGCTGAGCCTGGAGCCCAGAACGCCTCGGGGAACACGGCT CTGCACATCTGCGCCCTCTACAACAAGGAGACCTGTGCCAGGATCCTCCTGTATCGAGGTGCCGACAAGG ATGTGAAGAACAACAACGGACAGACCCCCTTCCAGGTGGCAGTGATTGCTGGGAATTTTGAGCTGGGGGA GCTGATCCGAAACCACCGAGAACAGGATGTGGTGCCCTTCCAGGAGTCCCCCAAGTACGCGGCCCGGCGA CGGGGGCCCCCAGGCACAGGGCTGACGGTGCCCCCGGCGCTGCTGCGGGCCAACAGTGACACCAGCATGG CGCTGCCCGACTGGATGGTGTTCTCCGCCCCGGGGGCCGCGTCCTCTGGGGCCCCTGGCCCTACCTCAGG GTCCCAGGGCCAGTCGCAGCCCTCGGCCCCCACCACCAAGCTCAGCAGCGGGACCCTCCGAAGTGCCAGC AGCCCCCGGGGTGCCAGGGCCCGCTCTCCATCCCGAGGGAGGCACCCTGAGGACGCCAAGAGGCAGCCCC GAGGCCGGCCCAGCTCCAGCGGGACACCCCGGGAAGGGCCAGCCGGGGGCACGGGGGGCTCAGGGGGCCC CGGGGGCTCCCTGGGCAGCCGCGGGAGGCGGAGGAAGCTCTACTCAGCGGTACCCGGACGCTCCTTCATG GCTGTGAAGTCCTACCAGGCCCAAGCCGAGGGGGAGATCTCCCTGAGCAAGGGCGAGAAGATCAAAGTAC TTAGCATCGGGGAAGGAGGCTTCTGGGAAGGCCAGGTCAAAGGTCGTGTTGGCTGGTTCCCCTCTGACTG CCTGGAAGAAGTGGCGAATCGCTCTCAGGAGAGCAAGCAAGAAAGCCGCAGTGACAAGGCAAAGAGACTC TTCCGGCATTATACCGTGGGCTCCTACGACAGCTTTGATGCCCCAAGCTTAATGGATGGGATTGGCCCAG GGAGCGATTACATCATTAAGGAGAAGACAGTCTTGCTGCAGAAGAAGGACAGTGAGGGGTTTGGGTTCGT GCTCCGGGGGGCCAAGGCGCAGACCCCCATCGAGGAGTTCACCCCCACCCCGGCCTTCCCGGCGCTGCAG TACCTGGAGTCGGTGGACGAGGGTGGCGTGGCATGGCGAGCTGGACTGCGAATGGGAGACTTCCTCATCG AGGTGAACGGGCAGAATGTGGTGAAGGTCGGCCACCGACAGGTGGTGAACATGATCCGCCAAGGGGGCAA CACGCTGATGGTGAAGGTGGTGATGGTCACCAGGCACCCGGACATGGATGAGGCAGTGCACAAGAAAGCA CCCCAGCAGGCCAAGCGGCTGCCGCCCCCAACCATCTCCCTGCGTTCCAAATCTATGACCTCAGAGCTGG AGGAGATGGAGTACGAGCAGCAGCCGGCGCCGGTGCCCAGCATGGAGAAAAAGCGGACCGTGTATCAGAT GGCTCTCAACAAACTGGACGAAATCCTGGCCGCAGCTCAACAGACCATCAGTGCAAGCGAAAGCCCTGGT CCCGGTGGCCTCGCGTCCCTGGGCAAACACCGACCCAAAGGTTTCTTTGCCACTGAGTCGAGCTTCGATC CCCACCACCGTGCCCAGCCAAGTTACGAGCGTCCTTCTTTCCTGCCTCCAGGACCTGGGTTGATGCTCCG GCAAAAATCTATCGGTGCGGCAGAAGATGACAGACCTTACCTAGCACCCCCAGCCATGAAATTCAGCCGC AGCCTGTCTGTGCCTGGTTCGGAGGACATTCCCCCGCCACCCACCACGTCCCCACCGGAGCCTCCCTACA GCACACCTCCAGTCCCCTCCTCCTCAGGGCGCCTCACCCCCTCCCCTCGGGGAGGGCCCTTCAACCCTGG CTCTGGTGGCCCCCTCCCCGCCTCCTCCCCTGCATCCTTTGACGGGCCCTCCCCTCCCGACACTCGCGTG GGGAGCCGCGAGAAGAGCCTGTACCACAGTGGGCCCCTGCCCCCGGCCCACCACCACCCGCCCCACCACC ACCACCACCACGCCCCGCCCCCTCAGCCCCACCACCACCACGCCCACCCCCCTCATCCTCCCGAGATGGA GACAGGCGGCTCTCCCGACGACCCTCCACCCCGCCTGGCTCTGGGGCCCCAGCCCAGCCTGCGAGGCTGG AGGGGCGGCGGGCCCAGCCCGACCCCGGGGGCCCCGTCCCCATCGCACCACGGCAGCGCGGGCGGGGGCG GCGGCTCCTCCCAGGGCCCGGCTCTACGCTATTTCCAGCTGCCCCCGCGGGCGGCCAGCGCAGCCATGTA CGTGCCCGCCCGCTCGGGCCGCGGCCGCAAGGGCCCGCTGGTCAAGCAGACCAAGGTGGAAGGCGAGCCC CAGAAGGGCGGCGGCCTCCCGCCCGCGCCGTCGCCCACGTCCCCGGCCTCCCCGCAGCCGCCGCCCGCCG TGGCCGCGCCCTCGGAGAAGAACTCCATCCCCATCCCCACCATCATCATCAAGGCCCCGTCCACCAGTAG CAGCGGCCGCAGCAGCCAGGGCAGCAGCACCGAGGCGGAGCCCCCCACCCAGCCGGAGCCCACGGGAGGC GGCGGCGGCGGCGGCTCCTCGCCCAGCCCCGCCCCGGCCATGTCACCCGTGCCCCCGTCCCCCTCGCCCG TGCCCACCCCCGCCTCGCCCAGCGGCCCGGCCACGCTGGACTTCACGAGCCAGTTCGGGGCCGCCCTGGT GGGGGCGGCCCGGAGGGAGGGGGGCTGGCAGAATGAGGCGCGCCGGCGCTCCACGCTGTTCCTGTCCACC GACGCGGGGGACGAGGACGGCGGGGACGGCGGGCTGGGCACAGGGGCGGCCCCGGGCCCGCGGCTGCGCC ACTCCAAATCCATCGACGAGGGCATGTTCTCCGCCGAGCCCTACCTCCGACTGGAGTCTGCGGGCAGCGG CGCGGGCTACGGCGGCTACGGGGCCGGTAGCCGAGCCTACGGGGGTGGCGGGGGCAGCAGCGCCTTCACC AGCTTCCTGCCCCCGCGACCCCTGGTGCACCCGCTGACCGGCAAGGCCCTGGATCCCGCCTCCCCGCTGG GGCTGGCCCTGGCCGCCCGCGAGCGAGCGCTGAAGGAGTCCTCGGAGGGCGGCGGGGCCCCCCAGCCGCC TCCCAGGCCCCCATCGCCCCGCTACGAGGCCCCGCCGCCCACCCCGCACCACCACTCGCCCCACGCCCAC CACGAGCCAGTGCTGCGTCTCTGGGGGGCCTCCCCGCCGGACCCTGCGCGCCGGGAGCTGGGGTACAGGG CCGGGCTGGGCAGCCAGGAGAAGTCCCTTCCCGCCAGCCCGCCCGCCGCCCGGCGTTCCCTGCTACACCG CCTGCCGCCCACCGCTCCCGGGGTGGGGCCCCTCCTGCTGCAGCTGGGGACGGAGCCCCCGGCCCCGCAC CCCGGAGTAAGCAAGCCCTGGAGGTCCGCAGCCCCCGAAGAACCCGAGCGGCTGCCGCTGCACGTGCGGT TCCTTGAAAACTGCCAGCCCCGGGCCCCTGTGACGAGCGGAAGGGGTCCCCCCTCGGAGGACGGGCCGGG GGTCCCGCCGCCCAGCCCACGCCGGTCCGTGCCCCCCTCCCCGACCTCCCCGAGGGCCAGCGAAGAGAAC GGGCTGCCCCTGCTGGTCCTGCCGCCTCCCGCCCCCTCGGTGGATGTGGAAGATGGCGAATTCCTTTTCG TGGAACCGCTGCCTCCGCCTCTGGAATTCTCCAACAGCTTCGAAAAGCCAGAGTCGCCCCTCACGCCTGG GCCTCCCCACCCGCTGCCCGACACACCTGCCCCTGCCACCCCGTTACCCCCTGTGCCACCCCCGGCTGTG GCCGCAGCCCCTCCCACCCTGGACTCCACCGCATCCAGCCTGACATCCTATGACAGCGAGGTGGCCACCC TGACCCAGGGGGCCTCCGCCGCTCCTGGGGACCCCCATCCACCAGGCCCGCCTGCCCCAGCAGCACCGGC TCCCGCTGCCCCACAGCCTGGCCCGGACCCTCCGCCTGGCACGGATTCTGGCATCGAGGAGGTGGACAGT CGGAGCAGCAGTGACCACCCACTGGAGACCATCAGCAGCGCCTCCACGCTGAGCAGCCTATCTGCCGAAG GTGGTGGCAGCGCAGGGGGTGGGGGCGGGGCTGGGGCCGGTGTGGCCAGTGGGCCGGAGCTTCTGGACAC CTATGTGGCCTACCTGGACGGCCAGGCCTTTGGGGGCAGCAGTACTCCCGGCCCGCCATACCCTCCTCAG CTCATGACTCCCTCTAAGCTCCGGGGCCGGGCGCTAGGAGCCAGCGGAGGCCTGCGGCCTGGCCCCAGCG GGGGACTCCGAGACCCTGTTACCCCCACCAGCCCCACCGTCTCGGTGACAGGGGCTGGAACCGATGGGCT GCTGGCCCTGCGTGCTTGTTCAGGACCCCCCACGGCAGGCGTGGCGGGGGGTCCGGTGGCTGTAGAGCCA GAAGTCCCACCGGTGCCCTTGCCGACGGCCTCCTCTCTGCCCCGGAAGCTGCTGCCCTGGGAGGAGGGCC CGGGCCCACCGCCACCACCTCTGCCCGGGCCCTTGGCCCAGCCTCAGGCCTCAGCCTTGGCCACAGTAAA AGCCAGCATCATCAGTGAACTCAGCTCCAAGCTTCAGCAGTTTGGGGGCTCCTCGGCAGCTGGCGGCGCT CTGCCCTGGGCCCGAGGAGGCAGTGGGGGAGGCGGAGACAGCCACCACGGGGGAGCCAGCTATGTCCCCG AGAGGACCTCCTCCCTGCAGCGGCAGAGACTCTCCGACGACTCCCAGTCCTCACTCCTCTCCAAGCCTGT CAGCAGCCTGTTTCAGAACTGGCCCAAACCACCTCTGCCGCCACTCCCCACCGGAACAGGGGTCTCCCCT ACAGCCGCTGCGGCCCCAGGGGCCACCTCACCCTCAGCCTCCTCCTCCTCCACGTCCACCCGCCACCTCC AGGGCGTGGAGTTCGAGATGCGGCCCCCTCTGCTCCGCCGGGCCCCCAGCCCCTCGCTGCTGCCCGCCTC GGAGCACAAGGTCAGCCCTGCGCCCAGGCCCTCGTCCCTGCCCATCCTGCCTTCCGGACCCCTCTACCCA GGCCTCTTTGACATCCGTGGCTCCCCAACTGGAGGGGCAGGAGGCTCGGCTGACCCCTTCGCCCCAGTCT TTGTGCCGCCACACCCGGGGATATCCGGGGGGCTCGGGGGAGCCTTGTCAGGGGCCTCGCGCTCCCTCTC ACCGACCCGCCTGCTCTCGCTGCCCCCGGACAAGCCGTTTGGCGCTAAACCTCTGGGGTTCTGGACCAAG TTCGACGTGGCTGATTGGCTGGAGTGGCTGGGTTTGGCGGAGCACCGAGCCCAGTTCCTGGACCACGAGA TCGATGGCTCCCACCTGCCCGCCTTGACCAAGGAGGACTACGTCGATCTAGGTGTGACCAGGGTGGGCCA CCGCATGAACATCGACCGGGCTCTCAAATTCTTCCTGGAGAGGTGA
Translation (2161 aa): MTHSPATSEDEERHSASECPEGGSESDSSPDGPGRGPRGTRGQGSGAPGSLASVRGLQGRSMSVPDDAHF SMMVFRIGIPDLHQTKCLRFNPDATIWTAKQQVLCALSESLQDVLNYGLFQPATSGRDANFLEEERLLRE YPQSFEKGVPYLEFRYKTRVYKQTNLDEKQLAKLHTKTGLKKFLEYVQLGTSDKVARLLDKGLDPNYHDS DSGETPLTLAAQTEGSVEVIRTLCLGGAHIDFRARDGMTALHKAACARHCLALTALLDLGGSPNYKDRRG LTPLFHTAMVGGDPRCCELLLFNRAQLGIADENGWQEIHQACQRGHSQHLEHLLFYGAEPGAQNASGNTA LHICALYNKETCARILLYRGADKDVKNNNGQTPFQVAVIAGNFELGELIRNHREQDVVPFQESPKYAARR RGPPGTGLTVPPALLRANSDTSMALPDWMVFSAPGAASSGAPGPTSGSQGQSQPSAPTTKLSSGTLRSAS SPRGARARSPSRGRHPEDAKRQPRGRPSSSGTPREGPAGGTGGSGGPGGSLGSRGRRRKLYSAVPGRSFM AVKSYQAQAEGEISLSKGEKIKVLSIGEGGFWEGQVKGRVGWFPSDCLEEVANRSQESKQESRSDKAKRL FRHYTVGSYDSFDAPSLMDGIGPGSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQ YLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDMDEAVHKKA PQQAKRLPPPTISLRSKSMTSELEEMEYEQQPAPVPSMEKKRTVYQMALNKLDEILAAAQQTISASESPG PGGLASLGKHRPKGFFATESSFDPHHRAQPSYERPSFLPPGPGLMLRQKSIGAAEDDRPYLAPPAMKFSR SLSVPGSEDIPPPPTTSPPEPPYSTPPVPSSSGRLTPSPRGGPFNPGSGGPLPASSPASFDGPSPPDTRV GSREKSLYHSGPLPPAHHHPPHHHHHHAPPPQPHHHHAHPPHPPEMETGGSPDDPPPRLALGPQPSLRGW RGGGPSPTPGAPSPSHHGSAGGGGGSSQGPALRYFQLPPRAASAAMYVPARSGRGRKGPLVKQTKVEGEP QKGGGLPPAPSPTSPASPQPPPAVAAPSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPTQPEPTGG GGGGGSSPSPAPAMSPVPPSPSPVPTPASPSGPATLDFTSQFGAALVGAARREGGWQNEARRRSTLFLST DAGDEDGGDGGLGTGAAPGPRLRHSKSIDEGMFSAEPYLRLESAGSGAGYGGYGAGSRAYGGGGGSSAFT SFLPPRPLVHPLTGKALDPASPLGLALAARERALKESSEGGGAPQPPPRPPSPRYEAPPPTPHHHSPHAH HEPVLRLWGASPPDPARRELGYRAGLGSQEKSLPASPPAARRSLLHRLPPTAPGVGPLLLQLGTEPPAPH PGVSKPWRSAAPEEPERLPLHVRFLENCQPRAPVTSGRGPPSEDGPGVPPPSPRRSVPPSPTSPRASEEN GLPLLVLPPPAPSVDVEDGEFLFVEPLPPPLEFSNSFEKPESPLTPGPPHPLPDTPAPATPLPPVPPPAV AAAPPTLDSTASSLTSYDSEVATLTQGASAAPGDPHPPGPPAPAAPAPAAPQPGPDPPPGTDSGIEEVDS RSSSDHPLETISSASTLSSLSAEGGGSAGGGGGAGAGVASGPELLDTYVAYLDGQAFGGSSTPGPPYPPQ LMTPSKLRGRALGASGGLRPGPSGGLRDPVTPTSPTVSVTGAGTDGLLALRACSGPPTAGVAGGPVAVEP EVPPVPLPTASSLPRKLLPWEEGPGPPPPPLPGPLAQPQASALATVKASIISELSSKLQQFGGSSAAGGA LPWARGGSGGGGDSHHGGASYVPERTSSLQRQRLSDDSQSSLLSKPVSSLFQNWPKPPLPPLPTGTGVSP TAAAAPGATSPSASSSSTSTRHLQGVEFEMRPPLLRRAPSPSLLPASEHKVSPAPRPSSLPILPSGPLYP GLFDIRGSPTGGAGGSADPFAPVFVPPHPGISGGLGGALSGASRSLSPTRLLSLPPDKPFGAKPLGFWTK FDVADWLEWLGLAEHRAQFLDHEIDGSHLPALTKEDYVDLGVTRVGHRMNIDRALKFFLER
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