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Report for CCDS12872.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12872.1 Public Homo sapiens 19 VSTM1 24 110 108 CCDS HistoryNCBI Gene:284415Re-query CCDS DB by CCDS ID:12872.1Re-query CCDS DB by GeneID:284415See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12872.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338372.7 ENSP00000343366.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000338372.7Link to Ensembl Protein Viewer:ENSP00000343366.2Re-query CCDS DB by Nucleotide ID:ENST00000338372Re-query CCDS DB by Protein ID:ENSP00000343366
Original member Current member NCBI NM_198481.4 NP_940883.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198481.4Link to Protein Sequence:NP_940883.2Re-query CCDS DB by Nucleotide ID:NM_198481Re-query CCDS DB by Protein ID:NP_940883Link to BLAST:NP_940883.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940883.2 236 Q6UX27-1 236 100% 0 0

Chromosomal Locations for CCDS 12872.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 54040961 54041080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54041779 54041816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54041916 54041953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54042169 54042196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54042277 54042369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54051410 54051448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54058306 54058590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54058697 54058732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54063744 54063777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGACCGCAGAATTCCTCTCCCTGCTTTGCCTCGGGCTGTGTCTGGGCTACGAAGATGAGAAAAAGAATG
AGAAACCGCCCAAGCCCTCCCTCCACGCCTGGCCCAGCTCGGTGGTTGAAGCCGAGAGCAATGTGACCCT
GAAGTGTCAGGCTCATTCCCAGAATGTGACATTTGTGCTGCGCAAGGTGAACGACTCTGGGTACAAGCAG
GAACAGAGCTCGGCAGAAAACGAAGCTGAATTCCCCTTCACGGACCTGAAGCCTAAGGATGCTGGGAGGT
ACTTTTGTGCCTACAAGACAACAGCCTCCCATGAGTGGTCAGAAAGCAGTGAACACTTGCAGCTGGTGGT
CACAGATAAACACGATGAACTTGAAGCTCCCTCAATGAAAACAGACACCAGAACCATCTTTGTCGCCATC
TTCAGCTGCATCTCCATCCTTCTCCTCTTCCTCTCAGTCTTCATCATCTACAGATGCAGCCAGCACAGTT
CATCATCTGAGGAATCCACCAAGAGAACCAGCCATTCCAAACTTCCGGAGCAGGAGGCTGCCGAGGCAGA
TTTATCCAATATGGAAAGGGTATCTCTCTCGACGGCAGACCCCCAAGGAGTGACCTATGCTGAGCTAAGC
ACCAGCGCCCTGTCTGAGGCAGCTTCAGACACCACCCAGGAGCCCCCAGGATCTCATGAATATGCGGCAC
TGAAAGTGTAG

Translation (236 aa):
MTAEFLSLLCLGLCLGYEDEKKNEKPPKPSLHAWPSSVVEAESNVTLKCQAHSQNVTFVLRKVNDSGYKQ
EQSSAENEAEFPFTDLKPKDAGRYFCAYKTTASHEWSESSEHLQLVVTDKHDELEAPSMKTDTRTIFVAI
FSCISILLLFLSVFIIYRCSQHSSSSEESTKRTSHSKLPEQEAAEADLSNMERVSLSTADPQGVTYAELS
TSALSEAASDTTQEPPGSHEYAALKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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