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Report for CCDS12988.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12988.1 Public Homo sapiens 19 MZF1 24 110 108 CCDS HistoryNCBI Gene:7593Re-query CCDS DB by CCDS ID:12988.1Re-query CCDS DB by GeneID:7593See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12988.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000215057.7 ENSP00000215057.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000215057.7Link to Ensembl Protein Viewer:ENSP00000215057.1Re-query CCDS DB by Nucleotide ID:ENST00000215057Re-query CCDS DB by Protein ID:ENSP00000215057
Original member Current member EBI ENST00000599369.5 ENSP00000469493.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000599369.5Link to Ensembl Protein Viewer:ENSP00000469493.1Re-query CCDS DB by Nucleotide ID:ENST00000599369Re-query CCDS DB by Protein ID:ENSP00000469493
Original member Current member NCBI NM_003422.3 NP_003413.2 Accepted alive Link to Nucleotide Sequence:NM_003422.3Link to Protein Sequence:NP_003413.2Re-query CCDS DB by Nucleotide ID:NM_003422Re-query CCDS DB by Protein ID:NP_003413Link to BLAST:NP_003413.2
Original member Current member NCBI NM_198055.2 NP_932172.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198055.2Link to Protein Sequence:NP_932172.1Re-query CCDS DB by Nucleotide ID:NM_198055Re-query CCDS DB by Protein ID:NP_932172Link to BLAST:NP_932172.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003413.2 734 P28698-1 734 100% 0 0
NP_932172.1 734 P28698-1 734 100% 0 0

Chromosomal Locations for CCDS 12988.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 58562072 58563504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58569277 58569397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58569516 58569586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58570344 58570527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58570994 58571389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2205 nt):
ATGAGGCCTGCGGTGCTGGGCTCCCCAGACCGAGCACCCCCAGAAGATGAGGGGCCTGTCATGGTGAAGC
TAGAGGACTCTGAGGAGGAGGGTGAGGCTGCCTTATGGGACCCAGGCCCTGAAGCTGCACGCCTGCGTTT
CCGGTGCTTCCGCTATGAGGAGGCCACAGGGCCCCAAGAGGCCCTGGCCCAGCTCCGAGAGCTGTGTCGC
CAGTGGCTGCGTCCAGAGGTACGCTCCAAGGAGCAGATGCTGGAGCTGTTGGTGCTGGAGCAGTTCCTGG
GCGCACTGCCCCCTGAGATCCAGGCCCGTGTGCAGGGGCAGCGGCCAGGCAGCCCCGAGGAGGCTGCTGC
CCTAGTAGATGGGCTGCGCCGGGAGCCGGGCGGACCCCGGAGATGGGTCACAGTCCAGGTGCAGGGCCAG
GAGGTCCTATCAGAGAAGATGGAGCCCTCCAGTTTCCAGCCCCTACCTGAAACTGAGCCTCCAACTCCAG
AGCCTGGGCCCAAGACACCTCCTAGGACTATGCAGGAATCACCACTGGGCCTGCAGGTGAAAGAGGAGTC
AGAGGTTACAGAGGACTCAGATTTCCTGGAGTCTGGGCCTCTAGCTGCCACCCAGGAGTCTGTACCCACC
CTCCTGCCTGAGGAGGCCCAGAGATGTGGGACCGTGCTGGACCAGATCTTTCCCCACAGCAAGACTGGGC
CTGAGGGTCCCTCATGGAGGGAGCACCCCAGGGCCCTGTGGCATGAGGAAGCTGGGGGCATCTTCTCCCC
AGGGTTCGCGCTGCAGCTAGGCAGCATCTCCGCAGGTCCAGGTAGTGTAAGCCCTCACCTCCACGTCCCC
TGGGACCTCGGCATGGCTGGCCTTTCTGGCCAGATCCAATCACCCTCCCGCGAAGGTGGCTTTGCGCATG
CGCTTCTGCTCCCCAGCGATCTGAGGAGTGAACAGGACCCCACGGACGAGGATCCCTGCCGGGGTGTGGG
CCCTGCTCTGATCACCACCCGCTGGCGCTCCCCCAGGGGCCGGAGCCGGGGCCGCCCCAGCACTGGGGGC
GGGGTGGTTAGGGGCGGCCGTTGCGATGTATGTGGCAAGGTGTTCAGCCAACGCAGCAACCTGCTGAGGC
ACCAGAAGATCCACACGGGTGAGCGACCATTCGTGTGCAGCGAGTGCGGCCGCAGCTTCAGCCGCAGCTC
GCACCTGCTGCGCCACCAGCTTACGCACACCGAGGAGCGGCCGTTCGTGTGCGGCGACTGTGGCCAGGGC
TTCGTGCGCAGCGCGCGCCTGGAAGAGCATCGGAGAGTGCACACGGGCGAACAGCCTTTCCGTTGCGCTG
AGTGCGGCCAGAGCTTCCGGCAGCGCTCCAATCTGCTGCAGCACCAGCGCATCCACGGCGATCCCCCGGG
CCCTGGCGCTAAGCCCCCGGCCCCTCCTGGTGCGCCCGAGCCTCCCGGCCCCTTTCCGTGCAGCGAGTGC
CGCGAGAGCTTCGCGCGGCGCGCCGTGCTGCTGGAGCACCAGGCGGTACACACGGGCGACAAGTCCTTTG
GCTGCGTCGAGTGCGGCGAGCGCTTCGGCCGCCGCTCAGTGCTGCTGCAGCACCGGCGCGTGCACAGTGG
CGAGCGGCCCTTCGCCTGTGCCGAGTGCGGCCAGAGCTTCCGGCAGCGCTCCAACCTGACGCAGCACCGG
CGCATCCACACCGGGGAGCGGCCCTTCGCCTGCGCCGAGTGTGGCAAGGCCTTCCGCCAGCGGCCTACGC
TCACGCAGCATCTCCGCGTACACACGGGCGAGAAACCCTTTGCCTGCCCCGAGTGTGGCCAGCGCTTCAG
CCAGCGCCTCAAGCTCACGCGTCATCAGAGGACACACACCGGCGAAAAGCCCTACCACTGCGGTGAGTGC
GGCCTGGGCTTCACGCAGGTCTCGCGGCTCACCGAGCACCAGCGCATCCACACGGGCGAACGGCCCTTCG
CCTGCCCCGAGTGCGGCCAGAGCTTTCGGCAGCACGCCAACCTCACCCAGCACCGGCGCATCCACACGGG
TGAACGGCCCTACGCATGCCCTGAGTGTGGCAAGGCCTTCCGCCAGCGGCCCACGCTCACGCAGCATCTG
CGCACCCACCGACGAGAGAAGCCCTTCGCCTGCCAGGACTGTGGCCGCCGCTTCCACCAGAGCACCAAGC
TCATTCAGCACCAGCGCGTCCACAGCGCCGAGTAG

Translation (734 aa):
MRPAVLGSPDRAPPEDEGPVMVKLEDSEEEGEAALWDPGPEAARLRFRCFRYEEATGPQEALAQLRELCR
QWLRPEVRSKEQMLELLVLEQFLGALPPEIQARVQGQRPGSPEEAAALVDGLRREPGGPRRWVTVQVQGQ
EVLSEKMEPSSFQPLPETEPPTPEPGPKTPPRTMQESPLGLQVKEESEVTEDSDFLESGPLAATQESVPT
LLPEEAQRCGTVLDQIFPHSKTGPEGPSWREHPRALWHEEAGGIFSPGFALQLGSISAGPGSVSPHLHVP
WDLGMAGLSGQIQSPSREGGFAHALLLPSDLRSEQDPTDEDPCRGVGPALITTRWRSPRGRSRGRPSTGG
GVVRGGRCDVCGKVFSQRSNLLRHQKIHTGERPFVCSECGRSFSRSSHLLRHQLTHTEERPFVCGDCGQG
FVRSARLEEHRRVHTGEQPFRCAECGQSFRQRSNLLQHQRIHGDPPGPGAKPPAPPGAPEPPGPFPCSEC
RESFARRAVLLEHQAVHTGDKSFGCVECGERFGRRSVLLQHRRVHSGERPFACAECGQSFRQRSNLTQHR
RIHTGERPFACAECGKAFRQRPTLTQHLRVHTGEKPFACPECGQRFSQRLKLTRHQRTHTGEKPYHCGEC
GLGFTQVSRLTEHQRIHTGERPFACPECGQSFRQHANLTQHRRIHTGERPYACPECGKAFRQRPTLTQHL
RTHRREKPFACQDCGRRFHQSTKLIQHQRVHSAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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