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Report for CCDS13026.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13026.1 Public Homo sapiens 20 SNRPB 24 110 108 CCDS HistoryNCBI Gene:6628Re-query CCDS DB by CCDS ID:13026.1Re-query CCDS DB by GeneID:6628See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13026.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000438552.6 ENSP00000412566.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000438552.6Link to Ensembl Protein Viewer:ENSP00000412566.2Re-query CCDS DB by Nucleotide ID:ENST00000438552Re-query CCDS DB by Protein ID:ENSP00000412566
Original member Current member NCBI NM_198216.2 NP_937859.1 Accepted alive Link to Nucleotide Sequence:NM_198216.2Link to Protein Sequence:NP_937859.1Re-query CCDS DB by Nucleotide ID:NM_198216Re-query CCDS DB by Protein ID:NP_937859Link to BLAST:NP_937859.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_937859.1 240 P14678-1 240 100% 0 0

Chromosomal Locations for CCDS 13026.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 2461756 2461793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2462636 2462761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2463089 2463227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2463747 2463899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2465708 2465819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2467607 2467758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2470688 2470690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (723 nt):
ATGACGGTGGGCAAGAGCAGCAAGATGCTGCAGCATATTGATTACAGGATGAGGTGCATCCTGCAGGACG
GCCGGATCTTCATTGGCACCTTCAAGGCTTTTGACAAGCACATGAATTTGATCCTCTGTGACTGTGATGA
GTTCAGAAAGATCAAGCCAAAGAACTCCAAACAAGCAGAAAGGGAAGAGAAGCGAGTCCTCGGTCTGGTG
CTGCTGCGAGGGGAGAATCTGGTCTCAATGACAGTAGAGGGACCTCCTCCCAAAGATACTGGTATTGCTC
GAGTTCCACTTGCTGGAGCTGCCGGGGGCCCAGGGATCGGCAGGGCTGCTGGCAGAGGAATCCCAGCTGG
GGTTCCCATGCCCCAGGCTCCTGCAGGACTTGCTGGGCCAGTCCGTGGGGTTGGCGGGCCATCCCAACAG
GTGATGACCCCACAAGGAAGAGGTACTGTTGCAGCCGCTGCAGCTGCTGCCACAGCCAGTATTGCCGGGG
CTCCAACCCAGTACCCACCTGGCCGTGGGGGTCCTCCCCCACCTATGGGCCGAGGAGCACCCCCTCCAGG
CATGATGGGCCCACCTCCTGGTATGAGACCTCCTATGGGTCCCCCAATGGGGATCCCCCCTGGAAGAGGG
ACTCCAATGGGCATGCCCCCTCCGGGAATGCGGCCTCCTCCCCCTGGGATGCGAGGGCCCCCTCCCCCGG
GAATGCGCCCACCAAGGCCCTAG

Translation (240 aa):
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLV
LLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQ
VMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRG
TPMGMPPPGMRPPPPGMRGPPPPGMRPPRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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